mtbls2 0.99.8
Steffen Neumann
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mtbls2 | | Last Changed Rev: 104682 / Revision: 107602 | | Last Changed Date: 2015-06-08 11:03:39 -0700 (Mon, 08 Jun 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### chmod a+r mtbls2 -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mtbls2
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* checking for file 'mtbls2/DESCRIPTION' ... OK
* preparing 'mtbls2':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rep.int, rownames,
sapply, setdiff, sort, table, tapply, union, unique, unlist,
unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: Rcpp
Loading required package: biocViews
Loading required package: affy
Loading required package: mzR
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:affy':
intensity
Attaching package: 'xcms'
The following objects are masked from 'package:Biobase':
phenoData, phenoData<-
Loading required package: igraph
Attaching package: 'igraph'
The following object is masked from 'package:xcms':
groups
The following objects are masked from 'package:BiocGenerics':
normalize, union
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Quitting from lines 293-311 (MTBLS2.Rmd)
Error: processing vignette 'MTBLS2.Rmd' failed with diagnostics:
cannot open the connection
Execution halted