CCl4 1.8.0
Audrey Kauffmann
| Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/CCl4 | | Last Changed Rev: 3460 / Revision: 3473 | | Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf CCl4.buildbin-libdir CCl4.Rcheck && mkdir CCl4.buildbin-libdir CCl4.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CCl4.buildbin-libdir CCl4_1.8.0.tar.gz >CCl4.Rcheck\00install.out 2>&1 && cp CCl4.Rcheck\00install.out CCl4-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=CCl4.buildbin-libdir --install="check:CCl4-install.out" --force-multiarch --no-vignettes --timings CCl4_1.8.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/CCl4.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CCl4/DESCRIPTION' ... OK
* this is package 'CCl4' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CCl4' can be installed ... OK
* checking installed package size ... NOTE
installed size is 304.3Mb
sub-directories of 1Mb or more:
data 12.0Mb
extdata 292.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
CCl4.RData 9.1Mb 2.1Mb xz
CCl4_RGList.RData 2.9Mb 2.0Mb xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'validDataFiles.R' [1s]
Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
<
< The following objects are masked from 'package:parallel':
<
< clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
< clusterExport, clusterMap, parApply, parCapply, parLapply,
< parLapplyLB, parRapply, parSapply, parSapplyLB
<
< The following objects are masked from 'package:stats':
<
< IQR, mad, xtabs
<
< The following objects are masked from 'package:base':
<
< Filter, Find, Map, Position, Reduce, anyDuplicated, append,
< as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
< eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
< lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
< pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
< tapply, union, unique, unlist, unsplit
<
28,37c7,9
< Vignettes contain introductory material; view with
< 'browseVignettes()'. To cite Bioconductor, see
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
<
<
< Attaching package: 'limma'
<
< The following object is masked from 'package:BiocGenerics':
<
< plotMA
---
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "C:\biocbld\bbs-3.2-data-experiment\tmpdir\RtmpKOhGDO\Rdiffa244060646f53" "C:\biocbld\bbs-3.2-data-experiment\tmpdir\RtmpKOhGDO\Rdiffb244016cb3621"' had status 1
[1s] OK
** running tests for arch 'x64' ...
Running 'validDataFiles.R' [1s]
Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
<
< The following objects are masked from 'package:parallel':
<
< clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
< clusterExport, clusterMap, parApply, parCapply, parLapply,
< parLapplyLB, parRapply, parSapply, parSapplyLB
<
< The following objects are masked from 'package:stats':
<
< IQR, mad, xtabs
<
< The following objects are masked from 'package:base':
<
< Filter, Find, Map, Position, Reduce, anyDuplicated, append,
< as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
< eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
< lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
< pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
< tapply, union, unique, unlist, unsplit
<
28,37c7,9
< Vignettes contain introductory material; view with
< 'browseVignettes()'. To cite Bioconductor, see
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
<
<
< Attaching package: 'limma'
<
< The following object is masked from 'package:BiocGenerics':
<
< plotMA
---
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "C:\biocbld\bbs-3.2-data-experiment\tmpdir\RtmpoppaeT\Rdiffa1bcc7306623a" "C:\biocbld\bbs-3.2-data-experiment\tmpdir\RtmpoppaeT\Rdiffb1bcc37ddc83"' had status 1
[1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/biocbld/bbs-3.2-data-experiment/meat/CCl4.Rcheck/00check.log'
for details.