BioC experimental data: CHECK report for DmelSGI on zin1
This page was generated on 2016-04-23 10:55:03 -0700 (Sat, 23 Apr 2016).
DmelSGI 1.2.0 Bernd Fischer
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/DmelSGI | Last Changed Rev: 3460 / Revision: 3730 | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
Summary
Package: DmelSGI |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings DmelSGI_1.2.0.tar.gz |
StartedAt: 2016-04-20 11:18:23 -0700 (Wed, 20 Apr 2016) |
EndedAt: 2016-04-20 11:19:18 -0700 (Wed, 20 Apr 2016) |
EllapsedTime: 55.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DmelSGI.Rcheck |
Warnings: 0 |
Command output
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###
### Running command:
###
### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings DmelSGI_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/DmelSGI.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DmelSGI’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DmelSGI’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
installed size is 141.3Mb
sub-directories of 1Mb or more:
Rscripts 1.7Mb
data 137.3Mb
doc 2.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.2-data-experiment/meat/DmelSGI.Rcheck/00check.log’
for details.
DmelSGI.Rcheck/00install.out:
* installing *source* package ‘DmelSGI’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DmelSGI)
DmelSGI.Rcheck/DmelSGI-Ex.timings:
name | user | system | elapsed
|
ChromatinSet-package | 4.127 | 0.020 | 4.152 |
|
DPiM | 0.018 | 0.000 | 0.018 |
|
FBgn2anno | 0.401 | 0.000 | 0.402 |
|
Features | 0.002 | 0.004 | 0.006 |
|
Interactions | 2.163 | 0.020 | 2.181 |
|
Intogen | 0.012 | 0.000 | 0.012 |
|
RohnEtAl | 0.002 | 0.000 | 0.003 |
|
SKDdata | 0.408 | 0.000 | 0.414 |
|
SelectedClusters | 0.003 | 0.000 | 0.003 |
|
SelectedClustersComplexes | 0.001 | 0.000 | 0.002 |
|
TID2HUGO | 0.005 | 0.004 | 0.008 |
|
applyDimensionReduction | 0.002 | 0.000 | 0.002 |
|
callInteractions | 0.001 | 0.000 | 0.002 |
|
datamatrix | 4.269 | 0.008 | 4.313 |
|
estimatePairwiseInteractions | 0.002 | 0.000 | 0.002 |
|
fitepistasis | 0.205 | 0.008 | 0.215 |
|
getBaseDir | 0.001 | 0.000 | 0.001 |
|
grid.spider | 0.002 | 0.000 | 0.002 |
|
hrNames | 0.001 | 0.000 | 0.001 |
|
learnCoComplexityFct | 0.001 | 0.000 | 0.001 |
|
mainEffects | 0.080 | 0.000 | 0.081 |
|
myHeatmap | 0.002 | 0.000 | 0.001 |
|
mymedpolish | 0.002 | 0.000 | 0.002 |
|
orderDim | 0.001 | 0.000 | 0.000 |
|
orderSpiderAxis | 0.001 | 0.000 | 0.001 |
|
pimatrix | 0.624 | 0.016 | 0.651 |
|
plot2Phenotypes | 0.002 | 0.000 | 0.002 |
|
plotHairballLabels | 0.001 | 0.000 | 0.001 |
|
qualityControlFeature | 0.001 | 0.000 | 0.004 |
|
qualityControlGene | 0.016 | 0.000 | 0.015 |
|
selectByStability | 0.001 | 0.000 | 0.002 |
|
stabilitySelection | 0.085 | 0.000 | 0.090 |
|
subSampleForStabilitySelection | 0.075 | 0.000 | 0.076 |
|
subSampleForStabilitySelectionFct | 0.001 | 0.000 | 0.001 |
|
toMatrix | 0.001 | 0.000 | 0.001 |
|
toRaster | 0.000 | 0.000 | 0.001 |
|
trsf | 0.001 | 0.000 | 0.000 |
|