BioC experimental data: CHECK report for FANTOM3and4CAGE on perceval

Package: FANTOM3and4CAGE

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings FANTOM3and4CAGE_1.5.0.tar.gz

StartedAt: 2015-08-22 09:12:58 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:14:16 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 78.3 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings FANTOM3and4CAGE_1.5.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/FANTOM3and4CAGE.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FANTOM3and4CAGE/DESCRIPTION’ ... OK
* this is package ‘FANTOM3and4CAGE’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FANTOM3and4CAGE’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 34.6Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [24s/28s] OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
FANTOMtissueCAGEhuman     11.418  0.692  13.572
FANTOMtimecourseCAGEhuman  5.511  0.534   6.905
FANTOMtissueCAGEmouse      4.563  0.637   5.864
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log’
for details.

* installing *source* package ‘FANTOM3and4CAGE’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FANTOM3and4CAGE)

name	user	system	elapsed
FANTOMhumanSamples	0.036	0.020	0.336
FANTOMmouseSamples	0.006	0.014	0.019
FANTOMtimecourseCAGEhuman	5.511	0.534	6.905
FANTOMtimecourseCAGEmouse	0.380	0.060	0.451
FANTOMtissueCAGEhuman	11.418	0.692	13.572
FANTOMtissueCAGEmouse	4.563	0.637	5.864