BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on windows1.bioconductor.org

Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.104.0

Command: rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz

StartedAt: 2015-10-24 15:07:50 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 15:09:07 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 77.2 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
###
###   rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz >KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGandMetacoreDzPathwaysGEO.Rcheck\00install.out KEGGandMetacoreDzPathwaysGEO-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir --install="check:KEGGandMetacoreDzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.104.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGandMetacoreDzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGandMetacoreDzPathwaysGEO' version '0.104.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGandMetacoreDzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGandMetacoreDzPathwaysGEO' as KEGGandMetacoreDzPathwaysGEO_0.104.0.zip
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.38	0.03	0.40
GSE11906	3.06	0.08	3.14
GSE14924_CD4	0.30	0.01	0.32
GSE14924_CD8	0.28	0.02	0.29
GSE16759	0.32	0.01	0.35
GSE19420	0.25	0.00	0.25
GSE20164	0.08	0.02	0.09
GSE22780	0.25	0.00	0.25
GSE23878	0.80	0.03	0.83
GSE24739_G0	0.45	0.02	0.47
GSE24739_G1	0.46	0.01	0.47
GSE30153	0.57	0.00	0.57
GSE32676	0.74	0.02	0.75
GSE38666_epithelia	0.34	0.03	0.38
GSE38666_stroma	0.25	0.00	0.25
GSE4183	0.28	0.01	0.30
GSE42057	0.94	0.07	1.00
GSE7305	0.69	0.01	0.70
KEGGandMetacoreDzPathwaysGEO-package	0.75	0.02	0.76

name	user	system	elapsed
GSE1145	0.35	0.02	0.36
GSE11906	2.75	0.03	2.78
GSE14924_CD4	0.26	0.03	0.30
GSE14924_CD8	0.24	0.00	0.23
GSE16759	0.3	0.0	0.3
GSE19420	0.26	0.01	0.28
GSE20164	0.06	0.00	0.06
GSE22780	0.21	0.02	0.22
GSE23878	0.73	0.02	0.75
GSE24739_G0	0.41	0.01	0.42
GSE24739_G1	0.40	0.00	0.41
GSE30153	0.50	0.02	0.52
GSE32676	0.68	0.00	0.67
GSE38666_epithelia	0.29	0.03	0.33
GSE38666_stroma	0.19	0.01	0.20
GSE4183	0.25	0.00	0.25
GSE42057	0.86	0.05	0.90
GSE7305	0.64	0.00	0.65
KEGGandMetacoreDzPathwaysGEO-package	0.59	0.02	0.60