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BioC experimental data: CHECK report for gageData on moscato1

This page was generated on 2016-04-20 20:26:28 -0700 (Wed, 20 Apr 2016).

Package 94/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gageData 2.8.0
Weijun Luo
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/gageData
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: gageData
Version: 2.8.0
Command: rm -rf gageData.buildbin-libdir gageData.Rcheck && mkdir gageData.buildbin-libdir gageData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gageData.buildbin-libdir gageData_2.8.0.tar.gz >gageData.Rcheck\00install.out 2>&1 && cp gageData.Rcheck\00install.out gageData-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=gageData.buildbin-libdir --install="check:gageData-install.out" --force-multiarch --no-vignettes --timings gageData_2.8.0.tar.gz
StartedAt: 2016-04-20 13:52:49 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 13:55:05 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 135.7 seconds
RetCode: 0
Status:  OK  
CheckDir: gageData.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf gageData.buildbin-libdir gageData.Rcheck && mkdir gageData.buildbin-libdir gageData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gageData.buildbin-libdir gageData_2.8.0.tar.gz >gageData.Rcheck\00install.out 2>&1 && cp gageData.Rcheck\00install.out gageData-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=gageData.buildbin-libdir --install="check:gageData-install.out" --force-multiarch --no-vignettes --timings gageData_2.8.0.tar.gz
###
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##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/gageData.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gageData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gageData' version '2.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gageData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.7Mb
  sub-directories of 1Mb or more:
    data  10.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [30s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hnrnp.cnts 13.45   0.11   14.53
bmp6        3.53   0.07    8.93
** running examples for arch 'x64' ... [31s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hnrnp.cnts 14.54   0.07   15.18
bmp6        4.58   0.06    7.16
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/gageData.Rcheck/00check.log'
for details.


gageData.Rcheck/00install.out:


install for i386

* installing *source* package 'gageData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'gageData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gageData' as gageData_2.8.0.zip
* DONE (gageData)

gageData.Rcheck/examples_i386/gageData-Ex.timings:

nameusersystemelapsed
bmp63.530.078.93
genesets4.020.024.36
gse16873.full2.000.062.06
hnrnp.cnts13.45 0.1114.53
sc.gene0.040.000.04

gageData.Rcheck/examples_x64/gageData-Ex.timings:

nameusersystemelapsed
bmp64.580.067.16
genesets4.220.014.23
gse16873.full2.530.072.60
hnrnp.cnts14.54 0.0715.18
sc.gene0.030.000.04