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BioC experimental data: CHECK report for geneLenDataBase on perceval

This page was generated on 2015-08-22 17:44:42 -0700 (Sat, 22 Aug 2015).

Package 98/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.5.0
Nadia Davidson
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: geneLenDataBase
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.5.0.tar.gz
StartedAt: 2015-08-22 09:19:35 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 09:28:36 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 541.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [26s/31s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [101s/127s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1410.0100.214
anoCar1.genscan.LENGTH0.0680.0010.079
anoCar1.xenoRefGene.LENGTH2.1980.0282.552
anoGam1.ensGene.LENGTH0.1000.0030.130
anoGam1.geneid.LENGTH0.0770.0050.101
anoGam1.genscan.LENGTH0.0670.0040.081
apiMel1.genscan.LENGTH0.0550.0040.059
apiMel2.ensGene.LENGTH0.1930.0020.267
apiMel2.geneid.LENGTH0.0730.0010.081
apiMel2.genscan.LENGTH0.0520.0020.076
aplCal1.xenoRefGene.LENGTH0.8270.0100.990
bosTau2.geneSymbol.LENGTH0.0610.0020.063
bosTau2.geneid.LENGTH0.9680.0071.105
bosTau2.genscan.LENGTH0.1290.0040.169
bosTau2.refGene.LENGTH0.0660.0020.075
bosTau2.sgpGene.LENGTH0.1610.0030.188
bosTau3.ensGene.LENGTH0.1680.0070.185
bosTau3.geneSymbol.LENGTH0.0490.0010.051
bosTau3.geneid.LENGTH0.2880.0080.356
bosTau3.genscan.LENGTH0.1120.0020.155
bosTau3.refGene.LENGTH0.0530.0020.077
bosTau3.sgpGene.LENGTH0.1450.0030.149
bosTau4.ensGene.LENGTH0.3510.0080.415
bosTau4.geneSymbol.LENGTH0.0460.0010.063
bosTau4.genscan.LENGTH0.1590.0050.184
bosTau4.nscanGene.LENGTH0.0470.0020.050
bosTau4.refGene.LENGTH0.0490.0020.058
braFlo1.xenoRefGene.LENGTH0.9380.0091.076
caeJap1.xenoRefGene.LENGTH1.3010.0081.516
caePb1.xenoRefGene.LENGTH0.6870.0070.801
caePb2.xenoRefGene.LENGTH0.7630.0100.946
caeRem2.xenoRefGene.LENGTH0.6300.0060.745
caeRem3.xenoRefGene.LENGTH1.1890.0071.357
calJac1.genscan.LENGTH0.1230.0030.155
calJac1.nscanGene.LENGTH0.1460.0030.180
calJac1.xenoRefGene.LENGTH1.5320.0101.848
canFam1.ensGene.LENGTH0.8870.0061.053
canFam1.geneSymbol.LENGTH0.0110.0040.015
canFam1.genscan.LENGTH0.0850.0030.096
canFam1.nscanGene.LENGTH0.0910.0020.123
canFam1.refGene.LENGTH0.0090.0010.011
canFam1.xenoRefGene.LENGTH1.0740.0091.306
canFam2.ensGene.LENGTH0.1450.0020.155
canFam2.geneSymbol.LENGTH0.0100.0010.011
canFam2.genscan.LENGTH0.8570.0061.193
canFam2.nscanGene.LENGTH0.0880.0020.090
canFam2.refGene.LENGTH0.0100.0010.011
canFam2.xenoRefGene.LENGTH0.9510.0071.205
cavPor3.ensGene.LENGTH0.2780.0030.325
cavPor3.genscan.LENGTH0.1440.0030.156
cavPor3.nscanGene.LENGTH0.0980.0010.127
cavPor3.xenoRefGene.LENGTH1.2520.0071.471
cb1.xenoRefGene.LENGTH1.3540.0091.617
cb3.xenoRefGene.LENGTH0.5470.0070.657
ce2.geneSymbol.LENGTH0.0980.0020.102
ce2.geneid.LENGTH0.0850.0020.093
ce2.refGene.LENGTH0.0910.0020.099
ce4.geneSymbol.LENGTH0.0950.0020.112
ce4.refGene.LENGTH0.0890.0020.108
ce4.xenoRefGene.LENGTH0.2000.0030.255
ce6.ensGene.LENGTH0.1520.0020.176
ce6.geneSymbol.LENGTH0.1050.0030.125
ce6.refGene.LENGTH0.0930.0020.106
ce6.xenoRefGene.LENGTH0.1230.0020.144
ci1.geneSymbol.LENGTH0.0100.0010.012
ci1.refGene.LENGTH0.0090.0010.011
ci1.xenoRefGene.LENGTH0.2730.0030.342
ci2.ensGene.LENGTH0.1410.0030.157
ci2.geneSymbol.LENGTH0.0100.0010.011
ci2.refGene.LENGTH0.0110.0020.016
ci2.xenoRefGene.LENGTH0.4440.0050.513
danRer3.ensGene.LENGTH0.2790.0030.321
danRer3.geneSymbol.LENGTH0.0930.0020.105
danRer3.refGene.LENGTH0.0740.0020.085
danRer4.ensGene.LENGTH0.2200.0020.261
danRer4.geneSymbol.LENGTH0.0820.0020.105
danRer4.genscan.LENGTH0.0950.0030.103
danRer4.nscanGene.LENGTH0.2470.0050.280
danRer4.refGene.LENGTH0.0790.0010.107
danRer5.ensGene.LENGTH0.1860.0020.221
danRer5.geneSymbol.LENGTH0.0660.0020.068
danRer5.refGene.LENGTH0.1970.0030.232
danRer5.vegaGene.LENGTH0.0720.0010.079
danRer5.vegaPseudoGene.LENGTH0.0070.0010.008
danRer6.ensGene.LENGTH0.1870.0040.206
danRer6.geneSymbol.LENGTH0.0740.0020.077
danRer6.refGene.LENGTH0.0680.0020.102
danRer6.xenoRefGene.LENGTH1.5830.0161.847
dm1.geneSymbol.LENGTH0.0910.0020.107
dm1.genscan.LENGTH0.0400.0010.046
dm1.refGene.LENGTH0.0860.0020.102
dm2.geneSymbol.LENGTH0.0870.0020.107
dm2.geneid.LENGTH0.0590.0020.064
dm2.genscan.LENGTH0.0390.0020.046
dm2.nscanGene.LENGTH0.0770.0020.096
dm2.refGene.LENGTH0.0840.0030.103
dm3.geneSymbol.LENGTH0.2030.0040.226
dm3.nscanPasaGene.LENGTH0.0790.0020.106
dm3.refGene.LENGTH0.0930.0020.205
dp2.genscan.LENGTH0.0460.0010.047
dp2.xenoRefGene.LENGTH1.0220.0081.166
dp3.geneid.LENGTH0.0580.0020.069
dp3.genscan.LENGTH0.0380.0010.040
dp3.xenoRefGene.LENGTH0.1670.0050.213
droAna1.geneid.LENGTH0.0960.0020.121
droAna1.genscan.LENGTH0.0310.0020.055
droAna1.xenoRefGene.LENGTH0.3150.0040.410
droAna2.genscan.LENGTH0.0710.0020.081
droAna2.xenoRefGene.LENGTH0.4140.0060.462
droEre1.genscan.LENGTH0.0470.0010.050
droEre1.xenoRefGene.LENGTH0.5170.0080.539
droGri1.genscan.LENGTH0.0580.0010.063
droGri1.xenoRefGene.LENGTH0.4370.0070.487
droMoj1.geneid.LENGTH0.1730.0020.183
droMoj1.genscan.LENGTH0.0800.0020.096
droMoj1.xenoRefGene.LENGTH0.3910.0040.443
droMoj2.genscan.LENGTH0.0530.0010.054
droMoj2.xenoRefGene.LENGTH0.4000.0030.427
droPer1.genscan.LENGTH0.0560.0010.061
droPer1.xenoRefGene.LENGTH0.5680.0060.709
droSec1.genscan.LENGTH0.0450.0010.046
droSec1.xenoRefGene.LENGTH0.4010.0030.504
droSim1.geneid.LENGTH0.0630.0010.095
droSim1.genscan.LENGTH0.0390.0010.051
droSim1.xenoRefGene.LENGTH0.3710.0030.432
droVir1.geneid.LENGTH0.2340.0040.255
droVir1.genscan.LENGTH0.0620.0030.067
droVir1.xenoRefGene.LENGTH0.3890.0040.465
droVir2.genscan.LENGTH0.0560.0040.079
droVir2.xenoRefGene.LENGTH0.4830.0030.595
droYak1.geneid.LENGTH0.0670.0010.069
droYak1.genscan.LENGTH0.0460.0020.048
droYak1.xenoRefGene.LENGTH0.4850.0040.542
droYak2.genscan.LENGTH0.0450.0010.046
droYak2.xenoRefGene.LENGTH0.4410.0040.520
equCab1.geneSymbol.LENGTH0.0100.0010.011
equCab1.geneid.LENGTH0.1340.0050.165
equCab1.nscanGene.LENGTH0.0650.0040.112
equCab1.refGene.LENGTH0.0100.0010.012
equCab1.sgpGene.LENGTH0.2050.0020.265
equCab2.ensGene.LENGTH0.1600.0050.203
equCab2.geneSymbol.LENGTH0.0120.0010.013
equCab2.nscanGene.LENGTH0.0890.0050.113
equCab2.refGene.LENGTH0.0120.0020.014
equCab2.xenoRefGene.LENGTH1.9110.0212.102
felCat3.ensGene.LENGTH0.1230.0020.124
felCat3.geneSymbol.LENGTH0.0080.0010.009
felCat3.geneid.LENGTH1.7280.0221.875
felCat3.genscan.LENGTH0.1650.0120.214
felCat3.nscanGene.LENGTH0.1130.0060.131
felCat3.refGene.LENGTH0.0070.0010.008
felCat3.sgpGene.LENGTH0.1940.0030.206
felCat3.xenoRefGene.LENGTH1.8670.0212.179
fr1.ensGene.LENGTH0.4190.0070.488
fr1.genscan.LENGTH0.0880.0050.113
fr2.ensGene.LENGTH0.1750.0030.180
galGal2.ensGene.LENGTH0.0830.0020.085
galGal2.geneSymbol.LENGTH0.0250.0010.025
galGal2.geneid.LENGTH0.0660.0030.068
galGal2.genscan.LENGTH0.0750.0030.082
galGal2.refGene.LENGTH0.0240.0010.025
galGal2.sgpGene.LENGTH0.0670.0020.069
galGal3.ensGene.LENGTH0.9380.0140.954
galGal3.geneSymbol.LENGTH0.0220.0010.024
galGal3.genscan.LENGTH0.0720.0020.075
galGal3.nscanGene.LENGTH0.0810.0020.083
galGal3.refGene.LENGTH0.0210.0010.024
galGal3.xenoRefGene.LENGTH0.6430.0090.655
gasAcu1.ensGene.LENGTH0.1430.0010.147
gasAcu1.nscanGene.LENGTH0.1280.0020.130
hg16.acembly.LENGTH0.4910.0210.546
hg16.ensGene.LENGTH0.0990.0050.106
hg16.exoniphy.LENGTH0.2890.0150.306
hg16.geneSymbol.LENGTH0.1590.0040.167
hg16.geneid.LENGTH0.0760.0040.080
hg16.genscan.LENGTH0.3160.0050.321
hg16.knownGene.LENGTH0.1550.0030.160
hg16.refGene.LENGTH0.1400.0030.142
hg16.sgpGene.LENGTH0.0840.0030.087
hg17.acembly.LENGTH0.5290.0070.536
hg17.acescan.LENGTH0.0160.0010.017
hg17.ccdsGene.LENGTH0.0340.0010.035
hg17.ensGene.LENGTH0.1320.0040.136
hg17.exoniphy.LENGTH0.4980.0080.505
hg17.geneSymbol.LENGTH0.1440.0030.147
hg17.geneid.LENGTH0.1090.0050.114
hg17.genscan.LENGTH0.3380.0050.345
hg17.knownGene.LENGTH0.1620.0030.165
hg17.refGene.LENGTH0.1320.0020.135
hg17.sgpGene.LENGTH0.1040.0020.109
hg17.vegaGene.LENGTH0.0610.0010.063
hg17.vegaPseudoGene.LENGTH0.0260.0020.027
hg17.xenoRefGene.LENGTH0.3450.0060.357
hg18.acembly.LENGTH0.9890.0231.020
hg18.acescan.LENGTH0.0180.0020.021
hg18.ccdsGene.LENGTH0.0520.0010.055
hg18.ensGene.LENGTH0.3160.0070.454
hg18.exoniphy.LENGTH1.8130.0211.887
hg18.geneSymbol.LENGTH0.1380.0020.162
hg18.geneid.LENGTH0.1200.0020.241
hg18.genscan.LENGTH0.0880.0020.110
hg18.knownGene.LENGTH0.2190.0040.228
hg18.knownGeneOld3.LENGTH0.0990.0030.110
hg18.refGene.LENGTH0.1250.0030.141
hg18.sgpGene.LENGTH0.1100.0030.131
hg18.sibGene.LENGTH0.4700.0080.619
hg18.xenoRefGene.LENGTH0.7870.0091.044
hg19.ccdsGene.LENGTH0.0640.0020.070
hg19.ensGene.LENGTH0.3870.0030.415
hg19.exoniphy.LENGTH0.7200.0080.728
hg19.geneSymbol.LENGTH0.1500.0030.157
hg19.knownGene.LENGTH0.2480.0050.253
hg19.nscanGene.LENGTH0.6260.0070.670
hg19.refGene.LENGTH0.1570.0020.161
hg19.xenoRefGene.LENGTH0.5620.0050.664
loxAfr3.xenoRefGene.LENGTH1.2170.0121.445
mm7.ensGene.LENGTH0.1960.0040.216
mm7.geneSymbol.LENGTH0.1320.0030.178
mm7.geneid.LENGTH0.1260.0030.149
mm7.genscan.LENGTH0.3240.0060.389
mm7.knownGene.LENGTH0.1560.0020.250
mm7.refGene.LENGTH0.1130.0010.131
mm7.sgpGene.LENGTH0.1090.0030.119
mm7.xenoRefGene.LENGTH0.5130.0050.616
mm8.ccdsGene.LENGTH0.0370.0020.044
mm8.ensGene.LENGTH0.1260.0030.159
mm8.geneSymbol.LENGTH0.1320.0030.151
mm8.geneid.LENGTH0.1090.0020.125
mm8.genscan.LENGTH0.0880.0030.096
mm8.knownGene.LENGTH0.3250.0080.415
mm8.nscanGene.LENGTH0.0960.0010.108
mm8.refGene.LENGTH0.1110.0020.117
mm8.sgpGene.LENGTH0.1130.0030.151
mm8.sibGene.LENGTH0.8360.0080.961
mm8.xenoRefGene.LENGTH0.5500.0110.623
mm9.acembly.LENGTH1.5520.0111.806
mm9.ccdsGene.LENGTH0.0440.0010.063
mm9.ensGene.LENGTH0.1980.0020.228
mm9.exoniphy.LENGTH0.5830.0080.660
mm9.geneSymbol.LENGTH0.1230.0020.161
mm9.geneid.LENGTH0.1310.0040.170
mm9.genscan.LENGTH0.0920.0040.111
mm9.knownGene.LENGTH0.1580.0050.218
mm9.nscanGene.LENGTH0.0920.0030.172
mm9.refGene.LENGTH0.1150.0040.126
mm9.sgpGene.LENGTH0.1130.0050.143
mm9.xenoRefGene.LENGTH0.8580.0201.060
monDom1.genscan.LENGTH0.0880.0020.112
monDom4.ensGene.LENGTH0.1120.0020.118
monDom4.geneSymbol.LENGTH0.0080.0010.009
monDom4.genscan.LENGTH0.0790.0020.147
monDom4.nscanGene.LENGTH0.0800.0020.092
monDom4.refGene.LENGTH0.0080.0010.019
monDom4.xenoRefGene.LENGTH0.5190.0090.718
monDom5.ensGene.LENGTH0.1710.0040.276
monDom5.geneSymbol.LENGTH0.0080.0010.008
monDom5.genscan.LENGTH0.0790.0020.116
monDom5.nscanGene.LENGTH0.1660.0030.239
monDom5.refGene.LENGTH0.0080.0010.020
monDom5.xenoRefGene.LENGTH1.1010.0101.310
ornAna1.ensGene.LENGTH0.1560.0020.281
ornAna1.geneSymbol.LENGTH0.0070.0000.007
ornAna1.refGene.LENGTH0.0070.0000.007
ornAna1.xenoRefGene.LENGTH1.2690.0121.623
oryLat2.ensGene.LENGTH0.1400.0020.212
oryLat2.geneSymbol.LENGTH0.0080.0010.009
oryLat2.refGene.LENGTH0.0090.0010.010
oryLat2.xenoRefGene.LENGTH0.7730.0060.981
panTro1.ensGene.LENGTH0.1530.0030.215
panTro1.geneid.LENGTH0.0820.0020.132
panTro1.genscan.LENGTH0.2710.0030.344
panTro1.xenoRefGene.LENGTH0.1770.0030.311
panTro2.ensGene.LENGTH0.1760.0030.268
panTro2.geneSymbol.LENGTH0.1390.0030.144
panTro2.genscan.LENGTH0.0960.0030.146
panTro2.nscanGene.LENGTH0.0970.0030.144
panTro2.refGene.LENGTH0.4240.0070.578
panTro2.xenoRefGene.LENGTH0.7890.0100.959
petMar1.xenoRefGene.LENGTH0.4040.0070.485
ponAbe2.ensGene.LENGTH0.1320.0020.171
ponAbe2.geneSymbol.LENGTH0.0190.0010.028
ponAbe2.genscan.LENGTH1.0000.0051.337
ponAbe2.nscanGene.LENGTH0.0860.0020.157
ponAbe2.refGene.LENGTH0.0160.0010.017
ponAbe2.xenoRefGene.LENGTH0.8890.0101.125
priPac1.xenoRefGene.LENGTH0.5390.0080.638
rheMac2.ensGene.LENGTH0.1850.0030.212
rheMac2.geneSymbol.LENGTH0.0100.0010.012
rheMac2.geneid.LENGTH0.1040.0030.122
rheMac2.nscanGene.LENGTH0.0910.0020.101
rheMac2.refGene.LENGTH0.0100.0010.012
rheMac2.sgpGene.LENGTH0.1000.0030.119
rheMac2.xenoRefGene.LENGTH0.7940.0130.957
rn3.ensGene.LENGTH0.1760.0040.260
rn3.geneSymbol.LENGTH0.0760.0020.080
rn3.geneid.LENGTH0.0760.0030.096
rn3.genscan.LENGTH0.0910.0030.111
rn3.knownGene.LENGTH0.0340.0010.048
rn3.nscanGene.LENGTH0.0840.0020.099
rn3.refGene.LENGTH0.2880.0070.361
rn3.sgpGene.LENGTH0.0900.0020.119
rn3.xenoRefGene.LENGTH0.8010.0100.995
rn4.ensGene.LENGTH0.2090.0030.262
rn4.geneSymbol.LENGTH0.0690.0010.092
rn4.geneid.LENGTH0.1260.0020.193
rn4.genscan.LENGTH0.0870.0030.100
rn4.knownGene.LENGTH0.0360.0020.065
rn4.nscanGene.LENGTH0.0800.0020.082
rn4.refGene.LENGTH0.0650.0020.078
rn4.sgpGene.LENGTH0.1190.0030.149
rn4.xenoRefGene.LENGTH0.5050.0080.579
sacCer1.ensGene.LENGTH0.0290.0010.031
sacCer2.ensGene.LENGTH0.0280.0020.073
strPur1.geneSymbol.LENGTH0.0090.0010.020
strPur1.genscan.LENGTH0.0830.0040.100
strPur1.refGene.LENGTH0.0090.0010.020
strPur1.xenoRefGene.LENGTH0.8180.0121.049
strPur2.geneSymbol.LENGTH0.0090.0010.012
strPur2.genscan.LENGTH0.1400.0010.147
strPur2.refGene.LENGTH0.0080.0010.009
strPur2.xenoRefGene.LENGTH0.8860.0121.036
supportedGeneIDs0.0210.0020.036
supportedGenomes0.1110.0080.738
taeGut1.ensGene.LENGTH0.0780.0020.081
taeGut1.geneSymbol.LENGTH0.0070.0010.007
taeGut1.genscan.LENGTH0.0480.0020.091
taeGut1.nscanGene.LENGTH0.0380.0010.039
taeGut1.refGene.LENGTH0.0060.0010.007
taeGut1.xenoRefGene.LENGTH0.7470.0061.099
tetNig1.ensGene.LENGTH0.1180.0010.140
tetNig1.geneid.LENGTH0.0950.0010.110
tetNig1.genscan.LENGTH0.0790.0020.111
tetNig1.nscanGene.LENGTH0.1050.0020.126
tetNig2.ensGene.LENGTH0.0980.0020.184
unfactor0.0100.0020.012
xenTro1.genscan.LENGTH1.1250.0131.387
xenTro2.ensGene.LENGTH0.1250.0020.171
xenTro2.geneSymbol.LENGTH0.0420.0010.045
xenTro2.genscan.LENGTH0.1000.0020.136
xenTro2.refGene.LENGTH0.0380.0010.074