BioC experimental data: CHECK report for hmyriB36 on windows1.bioconductor.org

Package: hmyriB36

Version: 1.6.0

Command: rm -rf hmyriB36.buildbin-libdir hmyriB36.Rcheck && mkdir hmyriB36.buildbin-libdir hmyriB36.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hmyriB36.buildbin-libdir hmyriB36_1.6.0.tar.gz >hmyriB36.Rcheck\00install.out 2>&1 && cp hmyriB36.Rcheck\00install.out hmyriB36-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hmyriB36.buildbin-libdir --install="check:hmyriB36-install.out" --force-multiarch --no-vignettes --timings hmyriB36_1.6.0.tar.gz

StartedAt: 2015-10-24 15:04:16 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 15:07:03 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 166.7 seconds

RetCode: 0

Status:  OK

CheckDir: hmyriB36.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf hmyriB36.buildbin-libdir hmyriB36.Rcheck && mkdir hmyriB36.buildbin-libdir hmyriB36.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hmyriB36.buildbin-libdir hmyriB36_1.6.0.tar.gz >hmyriB36.Rcheck\00install.out 2>&1 && cp hmyriB36.Rcheck\00install.out hmyriB36-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hmyriB36.buildbin-libdir --install="check:hmyriB36-install.out" --force-multiarch --no-vignettes --timings hmyriB36_1.6.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/hmyriB36.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hmyriB36/DESCRIPTION' ... OK
* this is package 'hmyriB36' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hmyriB36' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 79.8Mb
  sub-directories of 1Mb or more:
    data   21.1Mb
    parts  58.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'GGBase' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'hmyriB36/R/zzz.R':
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""))
    packageStartupMessage(paste("available chromosomes are named ",     paste(selectSome(cn), collapse = ", ")))

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
hmyriB36-pkg 8.94   0.53    9.47
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
hmyriB36-pkg 9.99   0.45   10.44
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/biocbld/bbs-3.2-data-experiment/meat/hmyriB36.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'hmyriB36' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'hmyriB36' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hmyriB36' as hmyriB36_1.6.0.zip
* DONE (hmyriB36)

name	user	system	elapsed
hmyriB36-pkg	8.94	0.53	9.47

name	user	system	elapsed
hmyriB36-pkg	9.99	0.45	10.44