BioC experimental data: CHECK report for seqCNA.annot on zin1

Package: seqCNA.annot

Version: 1.6.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings seqCNA.annot_1.6.0.tar.gz

StartedAt: 2016-04-20 12:04:00 -0700 (Wed, 20 Apr 2016)

EndedAt: 2016-04-20 12:04:32 -0700 (Wed, 20 Apr 2016)

EllapsedTime: 31.6 seconds

RetCode: 0

Status:  OK

CheckDir: seqCNA.annot.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings seqCNA.annot_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/seqCNA.annot.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seqCNA.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqCNA.annot’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqCNA.annot’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 14.6Mb
  sub-directories of 1Mb or more:
    data  14.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [11s/11s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
hg18 5.809  0.051   5.924
hg19 4.993  0.028   5.070
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/seqCNA.annot.Rcheck/00check.log’
for details.

* installing *source* package ‘seqCNA.annot’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (seqCNA.annot)

name	user	system	elapsed
hg18	5.809	0.051	5.924
hg18_len	0.002	0.000	0.002
hg19	4.993	0.028	5.070
hg19_len	0.002	0.000	0.002
supported.builds	0.001	0.000	0.000