systemPipeRdata 1.0.0 Thomas Girke
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/systemPipeRdata | Last Changed Rev: 3460 / Revision: 3473 | Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | [ OK ] | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd systemPipeRdata.buildbin-libdir/systemPipeRdata && zip -r ../../systemPipeRdata_1.0.0.zip . & cd ../..
###
##############################################################################
##############################################################################
Scanning files .
adding: DESCRIPTION (188 bytes security) (deflated 45%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/index.html (188 bytes security) (deflated 59%)
adding: doc/systemPipeRdata.html (188 bytes security) (deflated 73%)
adding: doc/systemPipeRdata.Rmd (188 bytes security) (deflated 61%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/annotation/ (256 bytes security) (stored 0%)
adding: extdata/annotation/GO/ (256 bytes security) (stored 0%)
adding: extdata/annotation/GO/catdb.RData (188 bytes security) (deflated 6%)
adding: extdata/annotation/GO/GOannotationsBiomart_mod.txt (188 bytes security) (deflated 90%)
adding: extdata/annotation/tair10.dict (188 bytes security) (deflated 69%)
adding: extdata/annotation/tair10.fasta (188 bytes security) (deflated 70%)
adding: extdata/annotation/tair10.fasta.fai (188 bytes security) (deflated 57%)
adding: extdata/annotation/tair10.gff (188 bytes security) (deflated 88%)
adding: extdata/annotation/tair10.sqlite (188 bytes security) (deflated 63%)
adding: extdata/fastq/ (256 bytes security) (stored 0%)
adding: extdata/fastq/SRR446027_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446027_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446028_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446028_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446029_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446029_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446030_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446030_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446031_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446031_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446032_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446032_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446033_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446033_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446034_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446034_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446035_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446035_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446036_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446036_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446037_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446037_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446038_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446038_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446039_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446039_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446040_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446040_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446041_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446041_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446042_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446042_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446043_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446043_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446044_1.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/fastq/SRR446044_2.fastq.gz (188 bytes security) (deflated 0%)
adding: extdata/param/ (256 bytes security) (stored 0%)
adding: extdata/param/.BatchJobs.R (188 bytes security) (deflated 19%)
adding: extdata/param/annotate_peaks.param (188 bytes security) (deflated 44%)
adding: extdata/param/annotate_vars.param (188 bytes security) (deflated 43%)
adding: extdata/param/bibtex.bib (188 bytes security) (deflated 66%)
adding: extdata/param/bowtiePE.param (188 bytes security) (deflated 42%)
adding: extdata/param/bowtieSE.param (188 bytes security) (deflated 41%)
adding: extdata/param/bwa.param (188 bytes security) (deflated 43%)
adding: extdata/param/count_rangesets.param (188 bytes security) (deflated 44%)
adding: extdata/param/filter_gatk.param (188 bytes security) (deflated 43%)
adding: extdata/param/filter_sambcf.param (188 bytes security) (deflated 43%)
adding: extdata/param/filter_vartools.param (188 bytes security) (deflated 43%)
adding: extdata/param/gatk.param (188 bytes security) (deflated 50%)
adding: extdata/param/gatk_run.sh (188 bytes security) (deflated 55%)
adding: extdata/param/gsnap.param (188 bytes security) (deflated 43%)
adding: extdata/param/macs2.param (188 bytes security) (deflated 45%)
adding: extdata/param/macs2_noinput.param (188 bytes security) (deflated 44%)
adding: extdata/param/Makefile (188 bytes security) (deflated 62%)
adding: extdata/param/Makefile_chipseq (188 bytes security) (deflated 62%)
adding: extdata/param/Makefile_rnaseq (188 bytes security) (deflated 62%)
adding: extdata/param/Makefile_varseq (188 bytes security) (deflated 62%)
adding: extdata/param/rsubread.param (188 bytes security) (deflated 43%)
adding: extdata/param/rundiff.param (188 bytes security) (deflated 43%)
adding: extdata/param/sambcf.param (188 bytes security) (deflated 49%)
adding: extdata/param/sambcf_run.sh (188 bytes security) (deflated 54%)
adding: extdata/param/targets.txt (188 bytes security) (deflated 66%)
adding: extdata/param/targetsPE.txt (188 bytes security) (deflated 71%)
adding: extdata/param/targetsPE_chip.txt (188 bytes security) (deflated 71%)
adding: extdata/param/targets_chip.txt (188 bytes security) (deflated 65%)
adding: extdata/param/tophat.param (188 bytes security) (deflated 42%)
adding: extdata/param/tophatV1.param (188 bytes security) (deflated 43%)
adding: extdata/param/torque.tmpl (188 bytes security) (deflated 49%)
adding: extdata/param/trim.param (188 bytes security) (deflated 43%)
adding: extdata/param/trimPE.param (188 bytes security) (deflated 49%)
adding: extdata/param/vartools.param (188 bytes security) (deflated 43%)
adding: extdata/workflows/ (256 bytes security) (stored 0%)
adding: extdata/workflows/chipseq/ (256 bytes security) (stored 0%)
adding: extdata/workflows/chipseq/data/ (256 bytes security) (stored 0%)
adding: extdata/workflows/chipseq/data/dummyfile (188 bytes security) (deflated 4%)
adding: extdata/workflows/chipseq/results/ (256 bytes security) (stored 0%)
adding: extdata/workflows/chipseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
adding: extdata/workflows/chipseq/results/seqlogo.pdf (188 bytes security) (deflated 6%)
adding: extdata/workflows/chipseq/systemPipeChIPseq.pdf (188 bytes security) (deflated 5%)
adding: extdata/workflows/chipseq/systemPipeChIPseq.R (188 bytes security) (deflated 73%)
adding: extdata/workflows/chipseq/systemPipeChIPseq.Rnw (188 bytes security) (deflated 65%)
adding: extdata/workflows/riboseq/ (256 bytes security) (stored 0%)
adding: extdata/workflows/riboseq/data/ (256 bytes security) (stored 0%)
adding: extdata/workflows/riboseq/data/dummyfile (188 bytes security) (deflated 4%)
adding: extdata/workflows/riboseq/results/ (256 bytes security) (stored 0%)
adding: extdata/workflows/riboseq/results/DEGcounts.pdf (188 bytes security) (deflated 11%)
adding: extdata/workflows/riboseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
adding: extdata/workflows/riboseq/results/featureCounts.pdf (188 bytes security) (deflated 7%)
adding: extdata/workflows/riboseq/results/featureCounts2.pdf (188 bytes security) (deflated 21%)
adding: extdata/workflows/riboseq/results/featurePlot.pdf (188 bytes security) (deflated 12%)
adding: extdata/workflows/riboseq/results/GOslimbarplotMF.pdf (188 bytes security) (deflated 10%)
adding: extdata/workflows/riboseq/results/heatmap1.pdf (188 bytes security) (deflated 8%)
adding: extdata/workflows/riboseq/results/sample_tree.pdf (188 bytes security) (deflated 10%)
adding: extdata/workflows/riboseq/results/vennplot.pdf (188 bytes security) (deflated 4%)
adding: extdata/workflows/riboseq/systemPipeRIBOseq.pdf (188 bytes security) (deflated 10%)
adding: extdata/workflows/riboseq/systemPipeRIBOseq.R (188 bytes security) (deflated 74%)
adding: extdata/workflows/riboseq/systemPipeRIBOseq.Rnw (188 bytes security) (deflated 66%)
adding: extdata/workflows/rnaseq/ (256 bytes security) (stored 0%)
adding: extdata/workflows/rnaseq/data/ (256 bytes security) (stored 0%)
adding: extdata/workflows/rnaseq/data/dummyfile (188 bytes security) (deflated 4%)
adding: extdata/workflows/rnaseq/results/ (256 bytes security) (stored 0%)
adding: extdata/workflows/rnaseq/results/DEGcounts.pdf (188 bytes security) (deflated 11%)
adding: extdata/workflows/rnaseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
adding: extdata/workflows/rnaseq/results/GOslimbarplotMF.pdf (188 bytes security) (deflated 10%)
adding: extdata/workflows/rnaseq/results/heatmap1.pdf (188 bytes security) (deflated 8%)
adding: extdata/workflows/rnaseq/results/sample_tree.pdf (188 bytes security) (deflated 10%)
adding: extdata/workflows/rnaseq/results/vennplot.pdf (188 bytes security) (deflated 4%)
adding: extdata/workflows/rnaseq/systemPipeRNAseq.pdf (188 bytes security) (deflated 8%)
adding: extdata/workflows/rnaseq/systemPipeRNAseq.R (188 bytes security) (deflated 70%)
adding: extdata/workflows/rnaseq/systemPipeRNAseq.Rnw (188 bytes security) (deflated 63%)
adding: extdata/workflows/varseq/ (256 bytes security) (stored 0%)
adding: extdata/workflows/varseq/data/ (256 bytes security) (stored 0%)
adding: extdata/workflows/varseq/data/dummyfile (188 bytes security) (deflated 4%)
adding: extdata/workflows/varseq/results/ (256 bytes security) (stored 0%)
adding: extdata/workflows/varseq/results/dummyfile (188 bytes security) (deflated 4%)
adding: extdata/workflows/varseq/systemPipeVARseq.pdf (188 bytes security) (deflated 6%)
adding: extdata/workflows/varseq/systemPipeVARseq.R (188 bytes security) (deflated 66%)
adding: extdata/workflows/varseq/systemPipeVARseq.Rnw (188 bytes security) (deflated 72%)
adding: extdata/workflows/varseq/systemPipeVARseq_Fct.R (188 bytes security) (deflated 28%)
adding: extdata/workflows/varseq/systemPipeVARseq_single.pdf (188 bytes security) (deflated 3%)
adding: extdata/workflows/varseq/systemPipeVARseq_single.R (188 bytes security) (deflated 64%)
adding: extdata/workflows/varseq/systemPipeVARseq_single.Rnw (188 bytes security) (deflated 70%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 30%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: help/systemPipeRdata.rdb (188 bytes security) (stored 0%)
adding: help/systemPipeRdata.rdx (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 54%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 27%)
adding: MD5 (188 bytes security) (deflated 61%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 9%)
adding: NEWS (188 bytes security) (deflated 26%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/systemPipeRdata (188 bytes security) (deflated 41%)
adding: R/systemPipeRdata.rdb (188 bytes security) (deflated 3%)
adding: R/systemPipeRdata.rdx (188 bytes security) (stored 0%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/test_samples.R (188 bytes security) (deflated 22%)