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This page was generated on 2025-03-20 12:06 -0400 (Thu, 20 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4756
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4487
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4514
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4441
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4406
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 144/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BayesSpace 1.16.0  (landing page)
Matt Stone
Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025)
git_url: https://git.bioconductor.org/packages/BayesSpace
git_branch: RELEASE_3_20
git_last_commit: f51d05a
git_last_commit_date: 2024-10-29 10:51:24 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for BayesSpace on palomino8

To the developers/maintainers of the BayesSpace package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BayesSpace.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BayesSpace
Version: 1.16.0
Command: chmod a+r BayesSpace -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BayesSpace
StartedAt: 2025-03-17 17:23:59 -0400 (Mon, 17 Mar 2025)
EndedAt: 2025-03-17 17:26:08 -0400 (Mon, 17 Mar 2025)
EllapsedTime: 128.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BayesSpace -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BayesSpace
###
##############################################################################
##############################################################################


* checking for file 'BayesSpace/DESCRIPTION' ... OK
* preparing 'BayesSpace':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BayesSpace.Rmd' using rmarkdown

Quitting from BayesSpace.Rmd:50-52 [download]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Dataset/sample not available
---
Backtrace:
    ▆
 1. └─BayesSpace::getRDS(dataset = "2018_thrane_melanoma", sample = "ST_mel1_rep2")
 2.   └─assertthat::assert_that(url.exists(url), msg = "Dataset/sample not available")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BayesSpace.Rmd' failed with diagnostics:
Dataset/sample not available
--- failed re-building 'BayesSpace.Rmd'

SUMMARY: processing the following file failed:
  'BayesSpace.Rmd'

Error: Vignette re-building failed.
Execution halted