| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:06 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 399/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNVRanger 1.22.0 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the CNVRanger package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVRanger.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CNVRanger |
| Version: 1.22.0 |
| Command: chmod a+r CNVRanger -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVRanger |
| StartedAt: 2025-03-17 18:01:05 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 18:05:21 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 255.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r CNVRanger -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVRanger
###
##############################################################################
##############################################################################
* checking for file 'CNVRanger/DESCRIPTION' ... OK
* preparing 'CNVRanger':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CNVRanger.Rmd' using rmarkdown
Quitting from CNVRanger.Rmd:733-737 [plotEQTL]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `errorHandler()`:
! Internal Server Error
---
Backtrace:
▆
1. └─CNVRanger::plotEQTL(...)
2. └─Gviz::IdeogramTrack(genome = genome, chr = chr, fontsize = 15)
3. └─methods::new(...)
4. ├─methods::initialize(value, ...)
5. └─Gviz::initialize(value, ...)
6. └─Gviz (local) .local(.Object, ...)
7. └─Gviz:::.cacheGenomes(genome = genome)
8. ├─Gviz::.doCache(...)
9. │ ├─BiocGenerics::eval(expression, envir = callEnv)
10. │ └─base::eval(expression, envir = callEnv)
11. │ └─base::eval(expression, envir = callEnv)
12. ├─rtracklayer::getTable(query)
13. └─rtracklayer::getTable(query)
14. └─rtracklayer (local) .local(object, ...)
15. ├─restfulr::read(url$getData$track, query)
16. └─restfulr::read(url$getData$track, query)
17. ├─base::tryCatch(...)
18. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
19. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
20. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
21. └─x@protocol$read(x, cacheInfo)
22. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler)
23. └─restfulr (local) errorHandler(responseError)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CNVRanger.Rmd' failed with diagnostics:
Internal Server Error
--- failed re-building 'CNVRanger.Rmd'
SUMMARY: processing the following file failed:
'CNVRanger.Rmd'
Error: Vignette re-building failed.
Execution halted