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This page was generated on 2025-03-17 12:06 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4756
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4487
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4514
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4441
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4399
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 549/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEqMS 1.24.0  (landing page)
Yafeng Zhu
Snapshot Date: 2025-03-13 13:00 -0400 (Thu, 13 Mar 2025)
git_url: https://git.bioconductor.org/packages/DEqMS
git_branch: RELEASE_3_20
git_last_commit: cd119ff
git_last_commit_date: 2024-10-29 10:31:17 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for DEqMS on palomino8

To the developers/maintainers of the DEqMS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEqMS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DEqMS
Version: 1.24.0
Command: chmod a+r DEqMS -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DEqMS
StartedAt: 2025-03-13 18:15:36 -0400 (Thu, 13 Mar 2025)
EndedAt: 2025-03-13 18:17:53 -0400 (Thu, 13 Mar 2025)
EllapsedTime: 137.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r DEqMS -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DEqMS
###
##############################################################################
##############################################################################


* checking for file 'DEqMS/DESCRIPTION' ... OK
* preparing 'DEqMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DEqMS-package-vignette.Rmd' using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
Content type 'text/plain; charset=UTF-8' length 3515045 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

trying URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'

Quitting from lines 228-231 [DownloadLabelfreeData] (DEqMS-package-vignette.Rmd)
Error: processing vignette 'DEqMS-package-vignette.Rmd' failed with diagnostics:
cannot open URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'
--- failed re-building 'DEqMS-package-vignette.Rmd'

SUMMARY: processing the following file failed:
  'DEqMS-package-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted