Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 980/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Heidi Dvinge
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the HTqPCR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HTqPCR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: HTqPCR |
Version: 1.60.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR |
StartedAt: 2024-11-20 01:26:02 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 01:26:19 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 17.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR ### ############################################################################## ############################################################################## * checking for file ‘HTqPCR/DESCRIPTION’ ... OK * preparing ‘HTqPCR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HTqPCR.Rnw’ using Sweave Loading required package: Biobase Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: RColorBrewer Loading required package: limma Attaching package: ‘limma’ The following object is masked from ‘package:BiocGenerics’: plotMA Warning in fun(libname, pkgname) : Package 'HTqPCR' is deprecated and will be removed from Bioconductor version 3.21 Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 1 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 2 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 3 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 4 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 5 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 6 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 1 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 2 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 3 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 4 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 5 is not drawn Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == : Outlier (-Inf) in boxplot 6 is not drawn Warning in rbind(deparse.level, ...) : number of columns of result, 1, is not a multiple of vector length 2 of arg 2 Error: processing vignette 'HTqPCR.Rnw' failed with diagnostics: chunk 68 (label = Check HTqPCR news) Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) --- failed re-building ‘HTqPCR.Rnw’ SUMMARY: processing the following file failed: ‘HTqPCR.Rnw’ Error: Vignette re-building failed. Execution halted