Alan Murphy
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/MungeSumstats |
| git_branch: RELEASE_3_20 |
| git_last_commit: 7c2d8c7 |
| git_last_commit_date: 2024-10-30 05:47:40 -0500 (Wed, 30 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:12 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1378/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MungeSumstats 1.14.1 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the MungeSumstats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MungeSumstats |
| Version: 1.14.1 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats |
| StartedAt: 2025-02-04 01:18:44 -0000 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 01:19:53 -0000 (Tue, 04 Feb 2025) |
| EllapsedTime: 69.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats ### ############################################################################## ############################################################################## * checking for file ‘MungeSumstats/DESCRIPTION’ ... OK * preparing ‘MungeSumstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MungeSumstats.Rmd’ using rmarkdown Quitting from lines 264-274 [unnamed-chunk-2] (MungeSumstats.Rmd) Error: processing vignette 'MungeSumstats.Rmd' failed with diagnostics: Install 'SNPlocs.Hsapiens.dbSNP155.GRCh37' to use 'GRCh37' as 'ref_genome' and 155 as dbSNP version --- failed re-building ‘MungeSumstats.Rmd’ --- re-building ‘OpenGWAS.Rmd’ using rmarkdown --- finished re-building ‘OpenGWAS.Rmd’ --- re-building ‘docker.Rmd’ using rmarkdown --- finished re-building ‘docker.Rmd’ SUMMARY: processing the following file failed: ‘MungeSumstats.Rmd’ Error: Vignette re-building failed. Execution halted