Pierrick Roger
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_20 |
| git_last_commit: e6b963e |
| git_last_commit_date: 2024-10-29 11:04:35 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:06 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz |
| StartedAt: 2025-03-17 23:13:44 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 23:18:59 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 314.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.05 2.25 109
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28 ucrt) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-03-17 23:18:04.720][biodb::testContext]
biodb.INFO [2025-03-17 23:18:04.723][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:04.725][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-17 23:18:04.726][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:04.728][biodb::testContext]
biodb.INFO [2025-03-17 23:18:04.736][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:04.739][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:04.764][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:04.765][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 23:18:04.766][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.771][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 23:18:04.797][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.805][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 23:18:04.807][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.814][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 23:18:04.816][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 23:18:04.818][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 23:18:04.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.825][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 23:18:04.827][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 23:18:04.829][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.836][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 23:18:04.838][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 23:18:04.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.845][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 23:18:04.847][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 23:18:04.849][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 23:18:04.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.856][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 23:18:04.858][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.865][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 23:18:04.867][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 23:18:04.869][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 23:18:04.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.876][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:04.878][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 23:18:04.880][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 23:18:04.882][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 23:18:04.884][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 23:18:04.886][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 23:18:04.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.891][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 23:18:04.892][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 23:18:04.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.897][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 23:18:04.899][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 23:18:04.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.903][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 23:18:04.905][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 23:18:04.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.911][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 23:18:04.912][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 23:18:04.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.917][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 23:18:04.918][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 23:18:04.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.923][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:04.924][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 23:18:04.928][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 23:18:04.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.932][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 23:18:04.934][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 23:18:04.935][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 23:18:04.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:04.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:04.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:04.942][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 23:18:04.971][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:04.986][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 23:18:04.994][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:04.995][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:04.996][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:04.998][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:04.999][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.000][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.001][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:05.003][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:05.004][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.006][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 23:18:05.008][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:05.010][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.012][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.014][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:05.014][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:05.014][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:05.014][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:05.014][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:05.016][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:05.018][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.021][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:05.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.024][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.026][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.027][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:05.028][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:05.029][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.031][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.032][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 23:18:05.034][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.035][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:05.037][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.038][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:05.039][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.040][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.042][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.043][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.045][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:05.047][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:05.049][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.051][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 23:18:05.053][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:05.055][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.057][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.058][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:05.058][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:05.058][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:05.058][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:05.058][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:05.060][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:05.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.066][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:05.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.070][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.071][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.072][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:05.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:05.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.076][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.077][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 23:18:05.079][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.080][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 23:18:05.081][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.083][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:05.084][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.085][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.086][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.089][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:05.090][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:05.091][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.092][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 23:18:05.093][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:05.095][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.096][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.097][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.098][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:05.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.102][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:05.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.104][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.106][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:05.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:05.110][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.111][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.112][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 23:18:05.114][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.116][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:05.117][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:05.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.124][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:05.126][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:05.127][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.128][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 23:18:05.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:05.131][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.132][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.134][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:05.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.140][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:05.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.145][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.146][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.148][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:05.150][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:05.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.154][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:05.159][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:05.161][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.307][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 23:18:05.315][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 23:18:05.317][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 23:18:05.320][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 23:18:05.323][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:05.325][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 23:18:05.327][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:05.328][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:05.330][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 23:18:05.332][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 23:18:05.333][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:05.335][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 23:18:05.336][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:05.338][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:05.339][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 23:18:05.341][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 23:18:05.343][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 23:18:05.344][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 23:18:05.346][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:05.347][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 23:18:05.349][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 23:18:05.351][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 23:18:05.352][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 23:18:05.354][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 23:18:05.355][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 23:18:05.357][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 23:18:05.359][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 23:18:05.360][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 23:18:05.362][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 23:18:05.363][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 23:18:05.365][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 23:18:05.367][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 23:18:05.368][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 23:18:05.370][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 23:18:05.371][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 23:18:05.373][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 23:18:05.374][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 23:18:05.376][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 23:18:05.378][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 23:18:05.379][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 23:18:05.381][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 23:18:05.383][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 23:18:05.384][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 23:18:05.386][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 23:18:05.388][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 23:18:05.389][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 23:18:05.391][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 23:18:05.392][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 23:18:05.394][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 23:18:05.395][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 23:18:05.397][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 23:18:05.399][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 23:18:05.400][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 23:18:05.402][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 23:18:05.403][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 23:18:05.405][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 23:18:05.407][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 23:18:05.408][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 23:18:05.410][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 23:18:05.411][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 23:18:05.413][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 23:18:05.414][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 23:18:05.416][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 23:18:05.417][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 23:18:05.419][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 23:18:05.421][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 23:18:05.422][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:05.424][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:05.425][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 23:18:05.427][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 23:18:05.428][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 23:18:05.430][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 23:18:05.432][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 23:18:05.433][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 23:18:05.435][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 23:18:05.438][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 23:18:05.440][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 23:18:05.442][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 23:18:05.444][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 23:18:05.447][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 23:18:05.449][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 23:18:05.451][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 23:18:05.454][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 23:18:05.496][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 23:18:05.499][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:05.502][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:05.503][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.505][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:05.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:05.650][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:05.660][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-17 23:18:05.663][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.665][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.667][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.668][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:05.669][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.670][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.672][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.673][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-17 23:18:05.674][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 23:18:05.675][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:05.677][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.678][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-17 23:18:05.679][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-17 23:18:05.680][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-17 23:18:05.682][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:05.683][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:05.683][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:05.683][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:05.684][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 23:18:05.686][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.688][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:05.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:05.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:05.692][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:05.693][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-17 23:18:05.693][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-17 23:18:05.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:05.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:05.698][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:05.699][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-17 23:18:05.699][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-17 23:18:05.705][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:05.707][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:05.709][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-17 23:18:05.710][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:05.712][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:05.714][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:05.742][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-17 23:18:05.744][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-17 23:18:05.748][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-17 23:18:05.753][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-17 23:18:05.757][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:05.758][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:05.760][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-17 23:18:05.762][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-17 23:18:05.772][biodb::testThat]
biodb.INFO [2025-03-17 23:18:05.774][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-17 23:18:05.775][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:05.776][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:05.800][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-03-17 23:18:05.802][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:05.806][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:05.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:05.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:05.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:05.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:05.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:05.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:05.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:05.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:05.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:05.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:05.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:05.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:05.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:05.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:05.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:05.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:05.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:05.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:05.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:05.966][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:06.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.042][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:06.043][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:06.164][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-03-17 23:18:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:06.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:06.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:06.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:06.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:06.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:06.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.607][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:06.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:06.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:06.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:06.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.700][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:06.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:06.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:06.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.857][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.895][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:06.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:06.996][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:06.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.044][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:07.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:07.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:07.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:07.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.211][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-17 23:18:07.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:07.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.214][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.233][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:07.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:07.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.248][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:07.267][biodb::testThat]
biodb.INFO [2025-03-17 23:18:07.268][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-17 23:18:07.270][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:07.271][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:07.285][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-03-17 23:18:07.292][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:07.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-03-17 23:18:07.301][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:07.303][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-03-17 23:18:07.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:07.325][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:07.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:07.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:07.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:07.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:07.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:07.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:07.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:07.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:07.356][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:07.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:07.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.402][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:07.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:07.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:07.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.445][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:07.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.466][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.470][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:07.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:07.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:07.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:07.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:07.549][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-03-17 23:18:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-17 23:18:07.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-17 23:18:07.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-17 23:18:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-17 23:18:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-17 23:18:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-17 23:18:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:07.593][biodb::testThat]
biodb.INFO [2025-03-17 23:18:07.595][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-17 23:18:07.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:07.598][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:07.602][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.605][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:07.607][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-03-17 23:18:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:07.675][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-03-17 23:18:07.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-17 23:18:07.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:07.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-17 23:18:07.714][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:07.716][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-17 23:18:07.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:07.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:07.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:07.752][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:07.768][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:07.770][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-03-17 23:18:07.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:07.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.886][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:07.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.889][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:07.899][biodb::testThat]
biodb.INFO [2025-03-17 23:18:07.900][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-17 23:18:07.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:07.902][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:07.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:08.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:08.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:08.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:08.027][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:08.030][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-03-17 23:18:08.075][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.077][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-17 23:18:08.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:08.079][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:08.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 23:18:08.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 23:18:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 23:18:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:08.241][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.243][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-17 23:18:08.244][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:08.245][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.256][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.258][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-17 23:18:08.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:08.260][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.272][biodb::testThat]
biodb.INFO [2025-03-17 23:18:08.273][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-17 23:18:08.274][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:08.275][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:08.280][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-03-17 23:18:09.118][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-03-17 23:18:10.000][biodb::testThat]
biodb.INFO [2025-03-17 23:18:10.002][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-17 23:18:10.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:10.004][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:10.360][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-03-17 23:18:10.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:10.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:10.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:10.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:10.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:10.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:10.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:10.745][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:10.748][biodb::testThat]
biodb.INFO [2025-03-17 23:18:10.750][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-03-17 23:18:10.751][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:10.753][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:10.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:10.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:10.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:10.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:10.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:10.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:10.929][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:11.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:11.008][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:11.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:11.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:11.016][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-03-17 23:18:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 23:18:11.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 23:18:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:11.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:11.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:11.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-17 23:18:11.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:11.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-17 23:18:11.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:11.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:11.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:11.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:11.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:11.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:11.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:11.154][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-03-17 23:18:11.206][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:11.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-03-17 23:18:11.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:11.227][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-03-17 23:18:11.229][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:11.231][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:11.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:11.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:11.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:11.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:11.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:11.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:11.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:11.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:11.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.265][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:11.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:11.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.275][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:11.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:11.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:11.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:11.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:11.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:11.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:11.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:11.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:11.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:11.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.341][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:11.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:11.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:11.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:11.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:11.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:11.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:11.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:11.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:11.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:11.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:11.469][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-03-17 23:18:11.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:11.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:11.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:11.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-17 23:18:11.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:11.561][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-17 23:18:11.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:11.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:11.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:11.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:11.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:11.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:11.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:11.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:11.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:11.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:11.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:11.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:11.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:11.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:11.648][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-03-17 23:18:11.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:11.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-03-17 23:18:11.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:11.893][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-03-17 23:18:11.895][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:11.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:11.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:11.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:11.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:11.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:12.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:12.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:12.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:12.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:12.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:12.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:12.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:12.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:12.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:12.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:12.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:12.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:12.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:12.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:12.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.122][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:12.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:12.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.127][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.129][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:12.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.138][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.156][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:12.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:12.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.177][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:12.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:12.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:12.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:12.280][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-03-17 23:18:12.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:12.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:12.517][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:12.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:12.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:12.527][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:12.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:12.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:12.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:12.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:12.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:12.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:12.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:12.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:12.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:12.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:12.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:12.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:12.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:12.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:12.588][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-03-17 23:18:12.590][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:12.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-03-17 23:18:12.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:12.623][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-03-17 23:18:12.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:12.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:12.628][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:12.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:12.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:12.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:12.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:12.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:12.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:12.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:12.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:12.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:12.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.680][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:12.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:12.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:12.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:12.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.691][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:12.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:12.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.703][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:12.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.707][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:12.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:12.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:12.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.718][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:12.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.726][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:12.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:12.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:12.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:12.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:12.809][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-03-17 23:18:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:12.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:12.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:12.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:12.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:12.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:12.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:12.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:12.860][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-03-17 23:18:12.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:12.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-03-17 23:18:12.867][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:12.977][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-03-17 23:18:12.979][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:12.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:12.983][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:12.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:12.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:12.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:13.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.021][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:13.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:13.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.053][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:13.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.065][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.078][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:13.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:13.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.168][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-03-17 23:18:13.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:13.221][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-03-17 23:18:13.228][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:13.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-03-17 23:18:13.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:13.250][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-03-17 23:18:13.253][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:13.255][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:13.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:13.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:13.281][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:13.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:13.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.344][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.345][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:13.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:13.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.415][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-03-17 23:18:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:13.457][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-03-17 23:18:13.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:13.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-03-17 23:18:13.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:13.491][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-03-17 23:18:13.494][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:13.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:13.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:13.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:13.517][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.521][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.528][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.532][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:13.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:13.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.594][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.607][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:13.610][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.628][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:13.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.647][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:13.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:13.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:13.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:13.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.720][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-03-17 23:18:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:13.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:13.758][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-03-17 23:18:13.759][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:13.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-03-17 23:18:13.764][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:13.927][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-03-17 23:18:13.929][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:13.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:13.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:13.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:13.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:13.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:13.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:13.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:13.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:13.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:13.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.983][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:13.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:13.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:13.998][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.029][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.043][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.053][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.151][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-03-17 23:18:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:14.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:14.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:14.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:14.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:14.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:14.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:14.194][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-03-17 23:18:14.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:14.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-03-17 23:18:14.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:14.399][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-03-17 23:18:14.400][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:14.402][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:14.404][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:14.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:14.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:14.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:14.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:14.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:14.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:14.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:14.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.443][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:14.445][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:14.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:14.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:14.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:14.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.492][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.536][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.647][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-03-17 23:18:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:14.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:14.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:14.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:14.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:14.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:14.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:14.694][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-03-17 23:18:14.695][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:14.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-03-17 23:18:14.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:14.743][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-03-17 23:18:14.745][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:14.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:14.749][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:14.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:14.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:14.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:14.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:14.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:14.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:14.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:14.777][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.792][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:14.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:14.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:14.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:14.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:14.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.825][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:14.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.837][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.883][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.959][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-03-17 23:18:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:14.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:14.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:14.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:15.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:15.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:15.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:15.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:15.654][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-03-17 23:18:15.655][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:15.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-03-17 23:18:15.659][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:15.674][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-03-17 23:18:15.676][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:15.678][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:15.679][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:15.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:15.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:15.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:15.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:15.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:15.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:15.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:15.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.714][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:15.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:15.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.724][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:15.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:15.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:15.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:15.739][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:15.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:15.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:15.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:15.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:15.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:15.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.765][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:15.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:15.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:15.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:15.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:15.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:15.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:15.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.801][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:15.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:15.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:15.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:15.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:15.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:15.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:15.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:15.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:15.893][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-03-17 23:18:15.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:15.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:15.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:15.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:15.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:15.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:15.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:15.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:15.923][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-03-17 23:18:15.924][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:15.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-03-17 23:18:15.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:15.945][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-03-17 23:18:15.947][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:15.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:15.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:15.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:15.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:15.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:16.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:16.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:16.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:16.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:16.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:16.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:16.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:16.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:16.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.322][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:16.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:16.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:16.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:16.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:16.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:16.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:16.427][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-03-17 23:18:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:16.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:16.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:16.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:16.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:16.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:16.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:16.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:16.465][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-03-17 23:18:16.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:16.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-03-17 23:18:16.470][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:16.517][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-03-17 23:18:16.519][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:16.520][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:16.522][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:16.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:16.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:16.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:16.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:16.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:16.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:16.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:16.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.568][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:16.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:16.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:16.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.638][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:16.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.651][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:16.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:16.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:16.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:16.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:16.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:16.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:16.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:16.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:16.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:16.771][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-03-17 23:18:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:16.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:16.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:16.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:16.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:16.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:16.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:16.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:16.829][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-03-17 23:18:16.830][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:16.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-03-17 23:18:16.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:16.888][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-03-17 23:18:16.891][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:16.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:16.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:16.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:16.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:16.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:16.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:16.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:16.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:16.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:16.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:16.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.940][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.956][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:16.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:16.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:16.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:16.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:16.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:17.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.005][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:17.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.035][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:17.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:17.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.051][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:17.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:17.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:17.132][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-03-17 23:18:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:17.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:17.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:17.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:17.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:17.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:17.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:17.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:17.200][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-03-17 23:18:17.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:17.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-03-17 23:18:17.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:17.234][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-03-17 23:18:17.237][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:17.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:17.242][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:17.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:17.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:17.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:17.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:17.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:17.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:17.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:17.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.349][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:17.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:17.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.366][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:17.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:17.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:17.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:17.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:17.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:17.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:17.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.413][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.425][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:17.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:17.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:17.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:17.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:17.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:17.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:17.588][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-03-17 23:18:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:17.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:17.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:17.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:17.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:17.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:17.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:17.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:17.729][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-03-17 23:18:17.731][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:17.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-03-17 23:18:17.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:17.778][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-03-17 23:18:17.780][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:17.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:17.784][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:17.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:17.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:17.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:17.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:17.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:17.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:17.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:17.837][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.858][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:17.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:17.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.885][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:17.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:17.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:17.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:17.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:17.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:17.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:17.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:17.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.944][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.988][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:17.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:17.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:17.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.006][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.110][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-03-17 23:18:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:18.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:18.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:18.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:18.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:18.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:18.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:18.143][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-03-17 23:18:18.144][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:18.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-03-17 23:18:18.148][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:18.162][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-03-17 23:18:18.164][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:18.166][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:18.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:18.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:18.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:18.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:18.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:18.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:18.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:18.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:18.226][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.240][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:18.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:18.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.252][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:18.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:18.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:18.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:18.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:18.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:18.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.291][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:18.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.298][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.321][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:18.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:18.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.338][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.443][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-03-17 23:18:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:18.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:18.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:18.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:18.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:18.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:18.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:18.511][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-03-17 23:18:18.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:18.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-03-17 23:18:18.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:18.536][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-03-17 23:18:18.538][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:18.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:18.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:18.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:18.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:18.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:18.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:18.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:18.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:18.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:18.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:18.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.595][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:18.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:18.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:18.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:18.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:18.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:18.630][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:18.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:18.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.678][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:18.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:18.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:18.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.695][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:18.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.711][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:18.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.812][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-03-17 23:18:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:18.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:18.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:18.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:18.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:19.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:19.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:19.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:19.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:19.045][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-03-17 23:18:19.047][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:19.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-03-17 23:18:19.053][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:19.075][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-03-17 23:18:19.175][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:19.179][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:19.183][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:19.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:19.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:19.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:19.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:19.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:19.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:19.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:19.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.234][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:19.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:19.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:19.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:19.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:19.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:19.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:19.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:19.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.298][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:19.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:19.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.306][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:19.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:19.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.338][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:19.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:19.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.355][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:19.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:19.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:19.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:19.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:19.460][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-03-17 23:18:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:19.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:19.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:19.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:19.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:19.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:19.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:19.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:19.589][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-03-17 23:18:19.597][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:19.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-03-17 23:18:19.604][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:19.736][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-03-17 23:18:19.739][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:19.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:19.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:19.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:19.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:19.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:19.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:19.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:19.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:19.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:19.839][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.845][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:19.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:19.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:19.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:19.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:19.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:19.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:19.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:19.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:19.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:19.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.933][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:19.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:19.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:19.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:19.992][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:19.994][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:19.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:19.998][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.008][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:20.010][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:20.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:20.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:20.101][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-03-17 23:18:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:20.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:20.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:20.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:20.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:20.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:20.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:20.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:20.148][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-03-17 23:18:20.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:20.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-03-17 23:18:20.156][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:20.178][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-03-17 23:18:20.181][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:20.183][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:20.186][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:20.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:20.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:20.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:20.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:20.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:20.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:20.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:20.683][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.691][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.702][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:20.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:20.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.723][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:20.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:20.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:20.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:20.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:20.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:20.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:20.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:20.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:20.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.780][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:20.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.786][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:20.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:20.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:20.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:20.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:20.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:20.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:20.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.831][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:20.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:20.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:20.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:20.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:20.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:20.943][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-03-17 23:18:20.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:20.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:20.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:20.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:21.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:21.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:21.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:21.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:21.008][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-03-17 23:18:21.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:21.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-03-17 23:18:21.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:21.166][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-03-17 23:18:21.168][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:21.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:21.173][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:21.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:21.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:21.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:21.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:21.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:21.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:21.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:21.365][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:21.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.402][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:21.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:21.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:21.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:21.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:21.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:21.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.461][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.463][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:21.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:21.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:21.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.501][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:21.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:21.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.507][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.521][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:21.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:21.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:21.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:21.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:21.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:21.655][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-03-17 23:18:21.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:22.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:22.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:22.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:22.065][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:22.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:22.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:22.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:22.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:22.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:22.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:22.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:22.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:22.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:22.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:22.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:22.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:22.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:22.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:22.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:22.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:22.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:22.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:22.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:22.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:22.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:22.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:22.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:22.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:22.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:22.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:22.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:22.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:22.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:22.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:22.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:23.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:23.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:23.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:23.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:23.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:23.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:23.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:23.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:23.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:23.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:23.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:23.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:23.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:23.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:23.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:23.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:23.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:23.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:23.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:23.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:23.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:23.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:24.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:24.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:24.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:24.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:24.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:24.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:24.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:24.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:24.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:24.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:24.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:24.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:24.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:24.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:24.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:24.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:24.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:25.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:25.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:25.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:25.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:25.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:25.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:25.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:25.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:25.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:26.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:26.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:26.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:26.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:26.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:26.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:26.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:26.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:26.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:26.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:27.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:27.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:27.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:27.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:27.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:27.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:27.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:27.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:27.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:28.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:28.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:28.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:28.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:28.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:28.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:28.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:28.995][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-03-17 23:18:28.998][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:29.101][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-03-17 23:18:29.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:29.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:29.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-03-17 23:18:29.120][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:29.770][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-03-17 23:18:29.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:29.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:29.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:29.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:29.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:29.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:29.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:29.875][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-03-17 23:18:29.877][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:29.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-03-17 23:18:29.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:29.906][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-03-17 23:18:29.909][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:29.912][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:29.915][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:30.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:30.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:30.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:30.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:30.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:30.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:30.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:30.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.144][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:30.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:30.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.150][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:30.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:30.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:30.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:30.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:30.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.227][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:30.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:30.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.254][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:30.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:30.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.286][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:30.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:30.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.303][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:30.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:30.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:30.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:30.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:30.424][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-03-17 23:18:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:30.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:30.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:30.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:30.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:30.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:30.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:30.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:30.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:30.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:30.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:30.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:30.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:30.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:30.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:30.671][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-03-17 23:18:30.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:30.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-03-17 23:18:30.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:30.705][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-03-17 23:18:30.708][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:30.712][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:30.714][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:30.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:30.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:30.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:30.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:30.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:30.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:30.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:30.912][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:30.930][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:30.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.015][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:31.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:31.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:31.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:31.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:31.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:31.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:31.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:31.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.233][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:31.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:31.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:31.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:31.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.374][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:31.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:31.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.380][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.391][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:31.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:31.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:31.487][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-03-17 23:18:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:31.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:31.789][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:31.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:31.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:31.798][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:31.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:31.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:31.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:31.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:31.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:31.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:31.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:31.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:31.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:31.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:31.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:32.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:32.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:32.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:32.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:32.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:32.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:32.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:32.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:32.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:32.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:32.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:32.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:32.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:32.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:32.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:32.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:32.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:32.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:32.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:32.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:33.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:33.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:33.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:33.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:33.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:33.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:33.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:33.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:33.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:33.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:33.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:33.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:33.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:33.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:33.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:33.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:33.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:33.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:33.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:33.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:33.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:33.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:33.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:33.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:33.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:33.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:33.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:33.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:33.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:33.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:33.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:33.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:33.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:33.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:33.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:34.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:34.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:34.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:34.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:34.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:34.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:34.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:34.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:34.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:34.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:34.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:34.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:34.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:34.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:34.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:34.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:34.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:34.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:34.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:34.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:34.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:34.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:34.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:34.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:34.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:34.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:34.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:34.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:35.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:35.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-17 23:18:35.729][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:35.733][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-17 23:18:35.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:35.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:35.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:35.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:35.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:35.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:35.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:35.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:35.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:36.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:36.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:36.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:36.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:36.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:36.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:36.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:37.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:37.698][biodb::testThat]
biodb.INFO [2025-03-17 23:18:37.700][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-17 23:18:37.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:37.705][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 23:18:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 23:18:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:37.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:37.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:37.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-17 23:18:37.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:37.901][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-17 23:18:37.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:37.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:37.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:37.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:37.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:37.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:37.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:37.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-17 23:18:37.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:37.983][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-17 23:18:37.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:37.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:37.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.103][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:38.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.170][private$selectFields]
biodb.TRACE[2025-03-17 23:18:38.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:38.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:38.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-17 23:18:38.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.298][private$selectFields]
biodb.TRACE[2025-03-17 23:18:38.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:38.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:38.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:38.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:38.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.426][private$selectFields]
biodb.TRACE[2025-03-17 23:18:38.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:38.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:38.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.467][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.469][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-17 23:18:38.504][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:38.506][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:38.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:38.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:38.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-17 23:18:38.716][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:38.721][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-17 23:18:38.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:38.731][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:38.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-17 23:18:38.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:38.749][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-17 23:18:38.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:38.925][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:38.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:38.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:38.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:38.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:38.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:38.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:38.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:38.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.990][private$selectFields]
biodb.TRACE[2025-03-17 23:18:38.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:38.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:38.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:38.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.020][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.042][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-17 23:18:39.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.139][private$selectFields]
biodb.TRACE[2025-03-17 23:18:39.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:39.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:39.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.167][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.174][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:39.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.244][private$selectFields]
biodb.TRACE[2025-03-17 23:18:39.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:39.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:39.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.262][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.269][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-17 23:18:39.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:39.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:39.329][biodb::testThat]
biodb.INFO [2025-03-17 23:18:39.330][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-17 23:18:39.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:39.332][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 23:18:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 23:18:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:39.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:39.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:39.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:39.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-17 23:18:39.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:39.399][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-17 23:18:39.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:39.460][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:39.466][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:39.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-17 23:18:39.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:39.475][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-17 23:18:39.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:39.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:39.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:39.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.643][private$selectFields]
biodb.TRACE[2025-03-17 23:18:39.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:39.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:39.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.659][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-17 23:18:39.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.727][private$selectFields]
biodb.TRACE[2025-03-17 23:18:39.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:39.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:39.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.743][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.749][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.775][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:39.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:39.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:39.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:39.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:39.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:39.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:39.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.929][private$selectFields]
biodb.TRACE[2025-03-17 23:18:39.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:39.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:39.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.945][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:39.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.951][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-17 23:18:39.969][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:39.970][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:39.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:40.039][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:40.044][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:40.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-17 23:18:40.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:40.049][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-17 23:18:40.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:40.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:40.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-17 23:18:40.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:40.069][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-17 23:18:40.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.166][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:40.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.198][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.213][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-17 23:18:40.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.267][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.282][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.288][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:40.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.331][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-17 23:18:40.370][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:40.371][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:40.403][biodb::testThat]
biodb.INFO [2025-03-17 23:18:40.405][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-17 23:18:40.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:40.407][biodb::testThat]
biodb.TRACE[2025-03-17 23:18:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 23:18:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 23:18:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:40.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:40.481][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:40.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-17 23:18:40.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:40.487][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-17 23:18:40.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:40.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:40.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-17 23:18:40.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:40.533][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-17 23:18:40.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.626][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:40.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.663][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.682][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-17 23:18:40.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.759][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.761][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.793][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:40.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:40.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:40.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:40.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:40.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.864][private$selectFields]
biodb.TRACE[2025-03-17 23:18:40.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:40.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:40.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:40.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.896][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-17 23:18:40.921][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:40.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:40.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:40.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:40.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:41.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:41.017][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:41.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-17 23:18:41.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:41.024][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-17 23:18:41.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:41.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:41.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-17 23:18:41.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:41.037][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-17 23:18:41.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:41.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:41.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:41.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-17 23:18:41.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.209][private$selectFields]
biodb.TRACE[2025-03-17 23:18:41.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:41.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:41.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-17 23:18:41.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.303][private$selectFields]
biodb.TRACE[2025-03-17 23:18:41.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:41.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:41.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.337][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-17 23:18:41.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.408][private$selectFields]
biodb.TRACE[2025-03-17 23:18:41.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-17 23:18:41.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-17 23:18:41.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-17 23:18:41.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-17 23:18:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-17 23:18:41.470][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-17 23:18:41.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-17 23:18:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-17 23:18:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:41.539][biodb::testThat]
biodb.INFO [2025-03-17 23:18:41.541][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-17 23:18:41.542][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:41.543][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:41.545][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-17 23:18:41.547][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:41.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-17 23:18:41.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:41.567][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2025-03-17 23:18:41.569][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:41.571][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:41.572][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:41.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:41.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:41.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.615][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:41.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:41.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:41.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:41.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:41.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.630][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:41.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:41.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.641][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:41.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:41.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.657][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:41.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:41.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:41.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:41.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:41.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:41.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:41.762][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-03-17 23:18:41.764][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-17 23:18:41.792][biodb::testThat]
biodb.INFO [2025-03-17 23:18:41.794][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-17 23:18:41.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:41.798][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:41.820][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-03-17 23:18:41.821][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-03-17 23:18:41.823][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-17 23:18:41.825][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-03-17 23:18:41.828][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-03-17 23:18:41.874][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-03-17 23:18:41.876][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:41.877][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-03-17 23:18:41.879][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:41.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:41.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:41.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:41.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:41.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:41.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:41.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:41.900][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:41.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:41.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:41.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:41.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:41.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:41.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:41.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:41.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.938][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:41.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:41.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:41.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:41.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.962][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:41.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:41.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:41.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:42.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:42.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:42.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:42.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:42.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:42.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:42.066][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:42.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:42.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:42.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:42.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.145][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:42.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.165][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:42.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:42.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:42.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:42.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:42.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:42.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:42.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:42.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:42.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:42.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:42.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:42.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:42.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:42.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:42.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:42.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:42.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.325][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:42.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:42.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.347][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:42.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:42.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.359][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:42.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:42.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:42.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.375][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:42.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:42.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:42.482][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-03-17 23:18:42.483][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-17 23:18:42.493][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-03-17 23:18:42.547][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.549][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-17 23:18:42.550][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:42.551][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.615][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.616][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-17 23:18:42.617][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:42.619][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.644][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.646][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-17 23:18:42.647][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:42.649][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:42.652][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:42.656][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:42.658][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2025-03-17 23:18:42.660][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:42.679][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2025-03-17 23:18:42.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:42.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:42.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:42.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:42.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:42.705][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 23:18:42.708][biodb::testThat]
biodb.INFO [2025-03-17 23:18:42.709][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2025-03-17 23:18:42.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:42.711][biodb::testThat]
biodb.ERROR[2025-03-17 23:18:42.738][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-03-17 23:18:42.765][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-03-17 23:18:42.790][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 23:18:42.792][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-17 23:18:42.793][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-17 23:18:42.794][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 23:18:42.795][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:42.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:42.798][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:42.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:42.800][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 23:18:42.812][biodb::testContext]
biodb.INFO [2025-03-17 23:18:42.814][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:42.815][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-03-17 23:18:42.817][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:42.818][biodb::testContext]
biodb.INFO [2025-03-17 23:18:42.821][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:42.824][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:42.831][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:42.833][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 23:18:42.834][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.839][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 23:18:42.841][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.846][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 23:18:42.847][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.853][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 23:18:42.855][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 23:18:42.857][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 23:18:42.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.864][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 23:18:42.866][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 23:18:42.869][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.876][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 23:18:42.878][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 23:18:42.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.884][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 23:18:42.886][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 23:18:42.887][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 23:18:42.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.892][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 23:18:42.893][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.898][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 23:18:42.900][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 23:18:42.901][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 23:18:42.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.908][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:42.910][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 23:18:42.912][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 23:18:42.914][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 23:18:42.915][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 23:18:42.917][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 23:18:42.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.922][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 23:18:42.923][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 23:18:42.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.927][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 23:18:42.929][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 23:18:42.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.936][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 23:18:42.938][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 23:18:42.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.945][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 23:18:42.947][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 23:18:42.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.955][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 23:18:42.957][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 23:18:42.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.964][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:42.966][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 23:18:42.973][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 23:18:42.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.981][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 23:18:42.983][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 23:18:42.985][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 23:18:42.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:42.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:42.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:42.992][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 23:18:42.996][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:42.998][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 23:18:42.999][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.001][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:43.003][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.004][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.005][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.006][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.008][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:43.009][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:43.010][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.011][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 23:18:43.013][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:43.014][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.015][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.016][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:43.016][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:43.016][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:43.016][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:43.016][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:43.017][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:43.019][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.021][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:43.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.027][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.028][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:43.030][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:43.032][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.034][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.036][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 23:18:43.040][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.041][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:43.043][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.045][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:43.047][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.048][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.050][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.052][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.054][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:43.056][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:43.057][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.059][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 23:18:43.061][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:43.063][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.065][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.067][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:43.067][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:43.067][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:43.067][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:43.067][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:43.069][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:43.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.074][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:43.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.078][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.080][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.082][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:43.085][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:43.087][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.089][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.091][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 23:18:43.094][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.096][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 23:18:43.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.100][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:43.102][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.104][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.106][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.107][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.108][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:43.109][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:43.111][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.112][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 23:18:43.113][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:43.114][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.116][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.117][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.118][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:43.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:43.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.125][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.127][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.128][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:43.129][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:43.130][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.132][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.133][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 23:18:43.142][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.144][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:43.145][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.146][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:43.147][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.149][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.150][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.151][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.152][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:43.153][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:43.155][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.156][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 23:18:43.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:43.158][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.160][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.161][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.162][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:43.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.166][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:43.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.168][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.169][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.171][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.172][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:43.173][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:43.174][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.176][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:43.177][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:43.179][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.280][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 23:18:43.281][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 23:18:43.283][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 23:18:43.285][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 23:18:43.286][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:43.288][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 23:18:43.290][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:43.291][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:43.293][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 23:18:43.294][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 23:18:43.296][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:43.298][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 23:18:43.299][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:43.301][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:43.303][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 23:18:43.304][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 23:18:43.306][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 23:18:43.308][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 23:18:43.310][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:43.311][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 23:18:43.313][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 23:18:43.314][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 23:18:43.316][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 23:18:43.318][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 23:18:43.319][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 23:18:43.321][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 23:18:43.322][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 23:18:43.324][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 23:18:43.326][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 23:18:43.327][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 23:18:43.329][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 23:18:43.330][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 23:18:43.332][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 23:18:43.333][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 23:18:43.335][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 23:18:43.337][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 23:18:43.338][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 23:18:43.340][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 23:18:43.342][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 23:18:43.343][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 23:18:43.345][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 23:18:43.347][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 23:18:43.348][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 23:18:43.350][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 23:18:43.352][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 23:18:43.353][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 23:18:43.355][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 23:18:43.356][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 23:18:43.358][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 23:18:43.360][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 23:18:43.361][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 23:18:43.363][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 23:18:43.365][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 23:18:43.366][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 23:18:43.368][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 23:18:43.370][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 23:18:43.371][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 23:18:43.373][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 23:18:43.374][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 23:18:43.376][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 23:18:43.378][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 23:18:43.379][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 23:18:43.381][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 23:18:43.382][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 23:18:43.384][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 23:18:43.386][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 23:18:43.387][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:43.389][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:43.390][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 23:18:43.392][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 23:18:43.393][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 23:18:43.395][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 23:18:43.397][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 23:18:43.398][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 23:18:43.400][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 23:18:43.402][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 23:18:43.403][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 23:18:43.405][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 23:18:43.407][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 23:18:43.409][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 23:18:43.412][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 23:18:43.414][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 23:18:43.417][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 23:18:43.427][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 23:18:43.431][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:43.434][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:43.435][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.438][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:43.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.593][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:43.595][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-17 23:18:43.597][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.598][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.599][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.600][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:43.602][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.603][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.604][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.605][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-17 23:18:43.607][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 23:18:43.608][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:43.609][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.610][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-17 23:18:43.611][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-17 23:18:43.614][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-17 23:18:43.616][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:43.618][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:43.618][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:43.618][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:43.619][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 23:18:43.620][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.621][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.623][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:43.624][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:43.625][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:43.626][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:43.627][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-17 23:18:43.627][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-17 23:18:43.628][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:43.630][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:43.631][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:43.632][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-17 23:18:43.632][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-17 23:18:43.634][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:43.635][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:43.637][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-17 23:18:43.639][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:43.641][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:43.642][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:43.646][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-17 23:18:43.647][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-17 23:18:43.648][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-17 23:18:43.651][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-17 23:18:43.653][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:43.654][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:43.656][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-17 23:18:43.658][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-17 23:18:43.661][biodb::testThat]
biodb.INFO [2025-03-17 23:18:43.663][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2025-03-17 23:18:43.664][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:43.665][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:43.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-17 23:18:43.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:43.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-17 23:18:43.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:43.681][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-17 23:18:43.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:43.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:43.696][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-17 23:18:43.698][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:43.763][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-17 23:18:43.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:43.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:43.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:43.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:43.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:43.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:43.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:43.798][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:43.800][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-17 23:18:43.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:43.983][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-17 23:18:43.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:43.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:43.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.257][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.261][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-17 23:18:44.264][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.266][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-17 23:18:44.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-17 23:18:44.290][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.292][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-17 23:18:44.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.338][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.343][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-17 23:18:44.349][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.352][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-17 23:18:44.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.397][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-17 23:18:44.400][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.402][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-17 23:18:44.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-03-17 23:18:44.430][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.450][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-03-17 23:18:44.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 23:18:44.488][biodb::testThat]
biodb.INFO [2025-03-17 23:18:44.490][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2025-03-17 23:18:44.492][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:44.494][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:44.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2025-03-17 23:18:44.512][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.658][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2025-03-17 23:18:44.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:44.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:44.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2025-03-17 23:18:44.692][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:44.695][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2025-03-17 23:18:44.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:44.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 23:18:44.723][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 23:18:44.725][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-17 23:18:44.726][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-17 23:18:44.727][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 23:18:44.728][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:44.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:44.730][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:44.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:44.733][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 23:18:44.739][biodb::testContext]
biodb.INFO [2025-03-17 23:18:44.741][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:44.742][biodb::testContext] Test context - Test web services
biodb.INFO [2025-03-17 23:18:44.743][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:44.744][biodb::testContext]
biodb.INFO [2025-03-17 23:18:44.748][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:44.750][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:44.756][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:44.757][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 23:18:44.758][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.763][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 23:18:44.765][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.796][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 23:18:44.798][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.806][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 23:18:44.808][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 23:18:44.810][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 23:18:44.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.818][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 23:18:44.820][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 23:18:44.822][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.828][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 23:18:44.830][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 23:18:44.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.837][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 23:18:44.838][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 23:18:44.839][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 23:18:44.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.844][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 23:18:44.845][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.850][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 23:18:44.851][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 23:18:44.852][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 23:18:44.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.856][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:44.858][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 23:18:44.860][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 23:18:44.861][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 23:18:44.863][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 23:18:44.865][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 23:18:44.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.872][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 23:18:44.874][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 23:18:44.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.881][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 23:18:44.883][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 23:18:44.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.890][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 23:18:44.892][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 23:18:44.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.899][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 23:18:44.901][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 23:18:44.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.908][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 23:18:44.910][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 23:18:44.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.917][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:44.919][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 23:18:44.924][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 23:18:44.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.932][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 23:18:44.934][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 23:18:44.936][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 23:18:44.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:44.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:44.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:44.944][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 23:18:44.947][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:44.949][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 23:18:44.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:44.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:44.954][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:44.955][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:44.956][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:44.957][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:44.959][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:44.960][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:44.961][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:44.962][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 23:18:44.963][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:44.965][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:44.966][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:44.967][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:44.967][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:44.967][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:44.967][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:44.967][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:44.969][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:44.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:44.971][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:44.972][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:44.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:44.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:44.976][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:44.978][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:44.980][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:44.982][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:44.984][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:44.986][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:44.988][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 23:18:44.991][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:44.993][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:44.995][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:44.997][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:44.999][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.001][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.003][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.005][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.007][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:45.009][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.011][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.012][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 23:18:45.013][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.015][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.016][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.017][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:45.017][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:45.017][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:45.017][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:45.017][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:45.019][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:45.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.022][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.023][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.024][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.026][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.027][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.028][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.029][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.030][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.031][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.033][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 23:18:45.035][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.036][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 23:18:45.037][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.039][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:45.040][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.041][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.042][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.044][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.045][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:45.046][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.048][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.049][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 23:18:45.051][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.052][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.053][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.054][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.056][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:45.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.058][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.059][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.060][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.062][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.064][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.066][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.068][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.069][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.071][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.073][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.075][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 23:18:45.078][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.080][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:45.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.084][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:45.086][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.087][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.089][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.091][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.093][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:45.095][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.097][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.099][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 23:18:45.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.102][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.106][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.108][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:45.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.119][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.121][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.124][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.126][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.128][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.130][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:45.132][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.280][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 23:18:45.283][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 23:18:45.285][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 23:18:45.288][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 23:18:45.290][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:45.293][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 23:18:45.295][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:45.298][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:45.300][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 23:18:45.303][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 23:18:45.305][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:45.308][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 23:18:45.310][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:45.313][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:45.315][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 23:18:45.318][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 23:18:45.320][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 23:18:45.323][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 23:18:45.325][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:45.328][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 23:18:45.330][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 23:18:45.333][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 23:18:45.335][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 23:18:45.337][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 23:18:45.339][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 23:18:45.342][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 23:18:45.345][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 23:18:45.347][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 23:18:45.348][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 23:18:45.350][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 23:18:45.352][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 23:18:45.353][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 23:18:45.355][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 23:18:45.356][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 23:18:45.358][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 23:18:45.360][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 23:18:45.361][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 23:18:45.363][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 23:18:45.365][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 23:18:45.366][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 23:18:45.374][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 23:18:45.377][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 23:18:45.379][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 23:18:45.381][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 23:18:45.382][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 23:18:45.384][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 23:18:45.386][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 23:18:45.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 23:18:45.390][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 23:18:45.391][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 23:18:45.393][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 23:18:45.395][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 23:18:45.396][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 23:18:45.398][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 23:18:45.399][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 23:18:45.401][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 23:18:45.403][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 23:18:45.404][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 23:18:45.406][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 23:18:45.408][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 23:18:45.409][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 23:18:45.411][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 23:18:45.412][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 23:18:45.414][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 23:18:45.416][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 23:18:45.417][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 23:18:45.419][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:45.421][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:45.422][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 23:18:45.424][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 23:18:45.426][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 23:18:45.427][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 23:18:45.429][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 23:18:45.430][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 23:18:45.432][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 23:18:45.434][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 23:18:45.435][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 23:18:45.437][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 23:18:45.438][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 23:18:45.440][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 23:18:45.442][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 23:18:45.444][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 23:18:45.446][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 23:18:45.448][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 23:18:45.452][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:45.453][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:45.455][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.458][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.629][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:45.631][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-17 23:18:45.633][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.634][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.635][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.637][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:45.638][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.640][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.641][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.643][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-17 23:18:45.644][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 23:18:45.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.647][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.648][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-17 23:18:45.649][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-17 23:18:45.651][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-17 23:18:45.652][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.653][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:45.653][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:45.653][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:45.655][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 23:18:45.656][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.657][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.658][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.661][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.663][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-17 23:18:45.663][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-17 23:18:45.664][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.665][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.666][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.668][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-17 23:18:45.668][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-17 23:18:45.669][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:45.671][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:45.673][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-17 23:18:45.675][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:45.676][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:45.678][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:45.682][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-17 23:18:45.683][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-17 23:18:45.685][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-17 23:18:45.687][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-17 23:18:45.688][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:45.689][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:45.691][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-17 23:18:45.692][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-17 23:18:45.694][biodb::testThat]
biodb.INFO [2025-03-17 23:18:45.695][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-03-17 23:18:45.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:45.698][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:45.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-17 23:18:45.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:45.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-17 23:18:45.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:45.714][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-17 23:18:45.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:45.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:45.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-17 23:18:45.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:45.742][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2025-03-17 23:18:45.759][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 23:18:45.761][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-17 23:18:45.762][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-17 23:18:45.763][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 23:18:45.764][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:45.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:45.767][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:45.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:45.769][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 23:18:45.777][biodb::testContext]
biodb.INFO [2025-03-17 23:18:45.778][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:45.780][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-03-17 23:18:45.781][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 23:18:45.783][biodb::testContext]
biodb.INFO [2025-03-17 23:18:45.788][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:45.791][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:45.801][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:45.803][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 23:18:45.805][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.810][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 23:18:45.811][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.816][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 23:18:45.817][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.822][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 23:18:45.823][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 23:18:45.824][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 23:18:45.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.829][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 23:18:45.830][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 23:18:45.831][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.836][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 23:18:45.837][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 23:18:45.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.842][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 23:18:45.843][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 23:18:45.844][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 23:18:45.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.849][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 23:18:45.850][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.855][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 23:18:45.856][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 23:18:45.857][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 23:18:45.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.862][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:45.863][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 23:18:45.865][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 23:18:45.866][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 23:18:45.867][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 23:18:45.869][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 23:18:45.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.873][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 23:18:45.875][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 23:18:45.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.887][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 23:18:45.889][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 23:18:45.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.893][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 23:18:45.895][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 23:18:45.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.899][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 23:18:45.901][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 23:18:45.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.905][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 23:18:45.906][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 23:18:45.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.911][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 23:18:45.912][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 23:18:45.915][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 23:18:45.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.920][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 23:18:45.921][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 23:18:45.923][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 23:18:45.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:45.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:45.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:45.927][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 23:18:45.929][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.930][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 23:18:45.932][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.933][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:45.934][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.935][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.936][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.938][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.939][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:45.940][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.941][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.943][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 23:18:45.944][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.945][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.946][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.948][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:45.948][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:45.948][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:45.948][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:45.948][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:45.949][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:45.950][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.952][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.953][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.955][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.956][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.957][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.958][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.959][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.960][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.962][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.963][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 23:18:45.965][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.966][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:45.967][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.969][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:45.970][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.972][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.974][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:45.975][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.977][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:45.979][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:45.980][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.982][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 23:18:45.983][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:45.984][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.985][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:45.986][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:45.986][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:45.986][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:45.986][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 23:18:45.986][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 23:18:45.988][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:45.989][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.991][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:45.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:45.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:45.994][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:45.995][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:45.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:45.998][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:45.999][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.000][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.001][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 23:18:46.003][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.005][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 23:18:46.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.007][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:46.008][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.010][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.011][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.012][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.014][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 23:18:46.015][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:46.017][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.018][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 23:18:46.019][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:46.021][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.022][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.023][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.025][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:46.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.027][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.028][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:46.029][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.030][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.032][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.033][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.034][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:46.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:46.036][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.038][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.039][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 23:18:46.041][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.042][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 23:18:46.043][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.045][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:46.046][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.047][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.048][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.050][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.051][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 23:18:46.052][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:46.054][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.055][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 23:18:46.056][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:46.058][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.060][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.061][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 23:18:46.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.066][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:46.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.074][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:46.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:46.079][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.080][self$setPropertyValue]
biodb.DEBUG[2025-03-17 23:18:46.082][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:46.083][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.184][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 23:18:46.185][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 23:18:46.187][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 23:18:46.189][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 23:18:46.190][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:46.192][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 23:18:46.194][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:46.195][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:46.197][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 23:18:46.199][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 23:18:46.200][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:46.202][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 23:18:46.204][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 23:18:46.205][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 23:18:46.207][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 23:18:46.208][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 23:18:46.210][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 23:18:46.212][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 23:18:46.213][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:46.215][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 23:18:46.217][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 23:18:46.218][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 23:18:46.220][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 23:18:46.222][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 23:18:46.223][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 23:18:46.225][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 23:18:46.226][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 23:18:46.228][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 23:18:46.230][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 23:18:46.231][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 23:18:46.233][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 23:18:46.234][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 23:18:46.236][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 23:18:46.239][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 23:18:46.241][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 23:18:46.244][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 23:18:46.246][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 23:18:46.249][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 23:18:46.251][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 23:18:46.254][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 23:18:46.257][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 23:18:46.259][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 23:18:46.262][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 23:18:46.264][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 23:18:46.267][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 23:18:46.270][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 23:18:46.272][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 23:18:46.274][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 23:18:46.276][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 23:18:46.277][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 23:18:46.279][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 23:18:46.281][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 23:18:46.282][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 23:18:46.284][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 23:18:46.286][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 23:18:46.287][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 23:18:46.289][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 23:18:46.291][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 23:18:46.292][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 23:18:46.294][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 23:18:46.296][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 23:18:46.297][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 23:18:46.299][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 23:18:46.301][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 23:18:46.302][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 23:18:46.304][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 23:18:46.305][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:46.307][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:46.309][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 23:18:46.310][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 23:18:46.312][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 23:18:46.320][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 23:18:46.322][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 23:18:46.324][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 23:18:46.326][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 23:18:46.328][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 23:18:46.329][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 23:18:46.331][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 23:18:46.333][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 23:18:46.334][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 23:18:46.336][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 23:18:46.337][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 23:18:46.339][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 23:18:46.341][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 23:18:46.343][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 23:18:46.344][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 23:18:46.345][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.348][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 23:18:46.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 23:18:46.516][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-17 23:18:46.518][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-17 23:18:46.520][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.522][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.523][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.524][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 23:18:46.526][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.527][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.528][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.529][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-17 23:18:46.531][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 23:18:46.532][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 23:18:46.533][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.535][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-17 23:18:46.536][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-17 23:18:46.538][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-17 23:18:46.539][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 23:18:46.540][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 23:18:46.540][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 23:18:46.540][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 23:18:46.541][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 23:18:46.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 23:18:46.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 23:18:46.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 23:18:46.549][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 23:18:46.550][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-17 23:18:46.550][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-17 23:18:46.551][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 23:18:46.553][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 23:18:46.554][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 23:18:46.555][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-17 23:18:46.555][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-17 23:18:46.557][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 23:18:46.559][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 23:18:46.560][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-17 23:18:46.562][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 23:18:46.564][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 23:18:46.567][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 23:18:46.572][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-17 23:18:46.574][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-17 23:18:46.577][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-17 23:18:46.580][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-17 23:18:46.582][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:46.584][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 23:18:46.587][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-17 23:18:46.589][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-17 23:18:46.592][biodb::testThat]
biodb.INFO [2025-03-17 23:18:46.594][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-03-17 23:18:46.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 23:18:46.597][biodb::testThat]
biodb.DEBUG[2025-03-17 23:18:46.603][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-17 23:18:46.611][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:46.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-17 23:18:46.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:46.619][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-17 23:18:46.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-17 23:18:46.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-17 23:18:46.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-17 23:18:46.636][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:46.640][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-03-17 23:18:46.665][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-03-17 23:18:46.667][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-17 23:18:46.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-03-17 23:18:46.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 23:18:46.721][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2025-03-17 23:18:46.723][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 23:18:46.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-17 23:18:46.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-17 23:18:46.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 23:18:46.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:46.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:46.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:46.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:46.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:46.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 23:18:46.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:46.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:46.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-17 23:18:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-17 23:18:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:46.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:46.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 23:18:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 23:18:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 23:18:46.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 23:18:46.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 23:18:46.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 23:18:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:46.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:46.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 23:18:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.901][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:46.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:46.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-17 23:18:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-17 23:18:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:46.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 23:18:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:46.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:46.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 23:18:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 23:18:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.933][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:46.935][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-17 23:18:46.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-17 23:18:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:46.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:46.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 23:18:46.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 23:18:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 23:18:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:46.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 23:18:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 23:18:47.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 23:18:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 23:18:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 23:18:47.014][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-03-17 23:18:47.023][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 23:18:47.025][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-17 23:18:47.026][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-17 23:18:47.027][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 23:18:47.029][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 23:18:47.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 23:18:47.031][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 23:18:47.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 23:18:47.033][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 23:18:47.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
23.95 1.35 44.81
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.05 | 2.25 | 109.00 | |
| ChebiEntry | 0.84 | 0.02 | 0.86 | |