Ogan Mancarci
| Snapshot Date: 2025-03-13 13:00 -0400 (Thu, 13 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/gemma.R |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1427efe |
| git_last_commit_date: 2024-11-26 19:06:18 -0400 (Tue, 26 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-17 12:06 -0400 (Mon, 17 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4399 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 787/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gemma.R 3.2.1 (landing page) Ogan Mancarci
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the gemma.R package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gemma.R.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gemma.R |
| Version: 3.2.1 |
| Command: chmod a+r gemma.R -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gemma.R |
| StartedAt: 2025-03-13 18:56:20 -0400 (Thu, 13 Mar 2025) |
| EndedAt: 2025-03-13 19:04:48 -0400 (Thu, 13 Mar 2025) |
| EllapsedTime: 508.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r gemma.R -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gemma.R ### ############################################################################## ############################################################################## * checking for file 'gemma.R/DESCRIPTION' ... OK * preparing 'gemma.R': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'gemma.R.Rmd' using rmarkdown Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building 'gemma.R.Rmd' --- re-building 'metadata.Rmd' using rmarkdown Quitting from lines 275-278 [unnamed-chunk-16] (metadata.Rmd) Error: processing vignette 'metadata.Rmd' failed with diagnostics: https://gemma.msl.ubc.ca/rest/v2/datasets/GSE48962/data/processed HTTP code 429 --- failed re-building 'metadata.Rmd' --- re-building 'metanalysis.Rmd' using rmarkdown --- finished re-building 'metanalysis.Rmd' SUMMARY: processing the following file failed: 'metadata.Rmd' Error: Vignette re-building failed. Execution halted