Till Soerensen
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_20 |
| git_last_commit: c4a056b |
| git_last_commit_date: 2024-10-29 09:59:09 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:12 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1021/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.38.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.38.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-03-18 01:43:01 -0000 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 01:46:12 -0000 (Tue, 18 Mar 2025) |
| EllapsedTime: 191.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=137<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 9 iterations
cluster 1(N=98) has 3 sub-cluster at 3 (7), ICL=105<>30
split 1 into 3 clusters
cluster 2(N=207) has 2 sub-cluster at 2 (23), ICL=26<>30
cluster 1(N=98) has 3 sub-cluster at 3 (7), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0.017 mins, 15 iterations
cluster 4(N=427) has 2 sub-cluster at 2 (14), ICL=46<>34
split 4 into 2 clusters
cluster 1(N=56) has 2 sub-cluster at 2 (100), ICL=32<>34
cluster 2(N=68) has 4 sub-cluster at 4 (27), ICL=17<>34
cluster 3(N=55) has 7 sub-cluster at 8 (14), ICL=17<>34
cluster 1(N=56) has 2 sub-cluster at 2 (100), ICL=0<>34
Model Refinement takes 0.05 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 8 iterations
cluster 1(N=129) has 2 sub-cluster at 2 (7), ICL=59<>37
split 1 into 2 clusters
cluster 2(N=148) has 2 sub-cluster at 2 (8), ICL=20<>37
cluster 5(N=47) has 2 sub-cluster at 2 (8), ICL=20<>37
cluster 3(N=137) has 2 sub-cluster at 2 (71), ICL=8.6<>37
cluster 1(N=129) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0.017 mins, 7 iterations
cluster 6(N=111) has 2 sub-cluster at 2 (7), ICL=74<>41
split 6 into 2 clusters
cluster 4(N=219) has 2 sub-cluster at 2 (11), ICL=53<>41
split 4 into 2 clusters
cluster 3(N=298) has 2 sub-cluster at 2 (10), ICL=36<>41
cluster 2(N=108) has 8 sub-cluster at 8 (50), ICL=23<>41
cluster 1(N=145) has 4 sub-cluster at 4 (21), ICL=16<>41
cluster 1(N=145) has 4 sub-cluster at 4 (21), ICL=0<>41
Model Refinement takes 0.13 mins(max 5: 0.05)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 7(N=92) has 2 sub-cluster at 2 (7), ICL=55<>45
split 7 into 2 clusters
cluster 3(N=556) has 2 sub-cluster at 3 (6), ICL=36<>45
cluster 5(N=32) has 2 sub-cluster at 2 (100), ICL=33<>45
cluster 1(N=272) has 2 sub-cluster at 2 (5), ICL=27<>45
cluster 2(N=191) has 3 sub-cluster at 3 (15), ICL=23<>45
cluster 4(N=462) has 5 sub-cluster at 5 (11), ICL=11<>45
cluster 8(N=142) has 4 sub-cluster at 4 (22), ICL=5.1<>45
cluster 1(N=272) has 2 sub-cluster at 2 (5), ICL=0<>45
Model Refinement takes 0.18 mins(max 6: 0.05)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0.017 mins, 10 iterations
cluster 1(N=557) has 3 sub-cluster at 3 (11), ICL=66<>48
split 1 into 3 clusters
cluster 3(N=1122) has 2 sub-cluster at 2 (8), ICL=52<>48
split 3 into 2 clusters
cluster 4(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 4 into 3 clusters
cluster 7(N=154) has 4 sub-cluster at 4 (16), ICL=41<>48
cluster 5(N=50) has 2 sub-cluster at 2 (100), ICL=39<>48
cluster 2(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 8(N=76) has 5 sub-cluster at 6 (94), ICL=12<>48
cluster 9(N=315) has 2 sub-cluster at 2 (9), ICL=5<>48
cluster 1(N=557) has 3 sub-cluster at 3 (11), ICL=0<>48
Model Refinement takes 0.22 mins(max 6: 0.067)
Fit Model 7 of (6/10) K=9->14 N=9682
EM 14 takes 0 mins, 7 iterations
cluster 10(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 4(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 12(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 3(N=78) has 5 sub-cluster at 5 (52), ICL=20<>48
cluster 6(N=408) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 2(N=174) has 5 sub-cluster at 6 (43), ICL=11<>48
cluster 1(N=360) has 2 sub-cluster at 2 (5), ICL=10<>48
cluster 9(N=50) has 2 sub-cluster at 2 (100), ICL=4.9<>48
cluster 13(N=75) has 3 sub-cluster at 4 (12), ICL=4<>48
cluster 14(N=309) has 8 sub-cluster at 8 (27), ICL=2.4<>48
cluster 8(N=555) has 4 sub-cluster at 4 (20), ICL=2.4<>48
cluster 7(N=384) has 7 sub-cluster at 8 (38), ICL=1.8<>48
cluster 1(N=360) has 2 sub-cluster at 2 (5), ICL=0<>48
Model Refinement takes 0.3 mins(max 11: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=143<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0 mins(max 1: 0)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=97) has 3 sub-cluster at 3 (6), ICL=117<>25
split 2 into 3 clusters
cluster 1(N=206) has 2 sub-cluster at 2 (6), ICL=36<>25
split 1 into 2 clusters
cluster 1(N=206) has 2 sub-cluster at 2 (6), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 15 iterations
cluster 2(N=14) has 2 sub-cluster at 2 (100), ICL=115<>28
split 2 into 2 clusters
cluster 3(N=70) has 4 sub-cluster at 4 (12), ICL=21<>28
cluster 5(N=59) has 3 sub-cluster at 4 (28), ICL=20<>28
cluster 1(N=404) has 8 sub-cluster at 8 (25), ICL=6.8<>28
cluster 1(N=404) has 8 sub-cluster at 8 (25), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 5 takes 0 mins, 16 iterations
cluster 1(N=803) has 2 sub-cluster at 2 (16), ICL=99<>31
split 1 into 2 clusters
cluster 4(N=131) has 2 sub-cluster at 2 (8), ICL=66<>31
split 4 into 2 clusters
cluster 5(N=127) has 2 sub-cluster at 2 (8), ICL=48<>31
split 5 into 2 clusters
cluster 2(N=15) has 2 sub-cluster at 2 (100), ICL=28<>31
cluster 3(N=143) has 3 sub-cluster at 4 (15), ICL=9.4<>31
cluster 1(N=803) has 2 sub-cluster at 2 (16), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0 mins, 8 iterations
cluster 1(N=101) has 2 sub-cluster at 2 (7), ICL=56<>34
split 1 into 2 clusters
cluster 4(N=280) has 2 sub-cluster at 2 (8), ICL=42<>34
split 4 into 2 clusters
cluster 5(N=105) has 2 sub-cluster at 2 (27), ICL=25<>34
cluster 6(N=141) has 7 sub-cluster at 7 (34), ICL=25<>34
cluster 8(N=219) has 7 sub-cluster at 7 (29), ICL=15<>34
cluster 3(N=20) has 2 sub-cluster at 2 (5), ICL=14<>34
cluster 7(N=24) has 2 sub-cluster at 2 (7), ICL=13<>34
cluster 1(N=101) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.13 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=8->10 N=4841
EM 10 takes 0.017 mins, 10 iterations
cluster 8(N=288) has 3 sub-cluster at 3 (7), ICL=44<>37
split 8 into 3 clusters
cluster 10(N=432) has 2 sub-cluster at 2 (37), ICL=29<>37
cluster 1(N=64) has 3 sub-cluster at 3 (20), ICL=28<>37
cluster 7(N=189) has 3 sub-cluster at 3 (22), ICL=28<>37
cluster 6(N=184) has 6 sub-cluster at 8 (50), ICL=16<>37
cluster 2(N=148) has 6 sub-cluster at 8 (30), ICL=13<>37
cluster 4(N=39) has 2 sub-cluster at 2 (14), ICL=0.48<>37
cluster 1(N=64) has 3 sub-cluster at 3 (20), ICL=0<>37
Model Refinement takes 0.18 mins(max 3: 0.067)
Fit Model 6 of (6/10) K=10->12 N=9682
EM 12 takes 0.017 mins, 8 iterations
cluster 12(N=911) has 3 sub-cluster at 3 (33), ICL=73<>40
split 12 into 3 clusters
cluster 11(N=50) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 7(N=391) has 2 sub-cluster at 2 (7), ICL=40<>40
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 10(N=151) has 3 sub-cluster at 3 (9), ICL=25<>40
cluster 6(N=384) has 2 sub-cluster at 3 (7), ICL=20<>40
cluster 9(N=169) has 6 sub-cluster at 7 (26), ICL=16<>40
cluster 8(N=333) has 4 sub-cluster at 4 (19), ICL=15<>40
cluster 2(N=305) has 8 sub-cluster at 8 (40), ICL=8.8<>40
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.27 mins(max 3: 0.067)
Fit Model 7 of (6/10) K=12->14 N=9682
EM 14 takes 0 mins, 3 iterations
cluster 7(N=391) has 2 sub-cluster at 2 (7), ICL=40<>40
cluster 1(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 10(N=151) has 2 sub-cluster at 2 (9), ICL=25<>40
cluster 6(N=390) has 2 sub-cluster at 2 (6), ICL=19<>40
cluster 8(N=328) has 4 sub-cluster at 5 (36), ICL=18<>40
cluster 9(N=167) has 5 sub-cluster at 6 (41), ICL=17<>40
cluster 2(N=308) has 2 sub-cluster at 2 (8), ICL=9.9<>40
cluster 14(N=16) has 2 sub-cluster at 2 (100), ICL=4.9<>40
cluster 12(N=394) has 8 sub-cluster at 8 (33), ICL=4.9<>40
cluster 1(N=122) has 3 sub-cluster at 3 (28), ICL=0<>40
Model Refinement takes 0.3 mins(max 3: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted