Stuart Lee
| Snapshot Date: 2025-03-18 12:45 -0400 (Tue, 18 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/fluentGenomics |
| git_branch: RELEASE_3_20 |
| git_last_commit: 51c0b4f |
| git_last_commit_date: 2024-10-29 10:03:20 -0400 (Tue, 29 Oct 2024) |
| Back to Workflows build report for BioC 3.20 |
This page was generated on 2025-03-18 16:30 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 12/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| fluentGenomics 1.18.0 (landing page) Stuart Lee
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the fluentGenomics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fluentGenomics |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics |
| StartedAt: 2025-03-18 13:10:40 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 13:22:16 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 696.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
###
##############################################################################
##############################################################################
* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown
Quitting from fluentGenomics.Rmd:742-758 [line-chart]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! vector memory limit of 64.0 Gb reached, see mem.maxVSize()
---
Backtrace:
▆
1. ├─... %>% select(-var)
2. ├─dplyr::select(., -var)
3. ├─tidyr::pivot_longer(...)
4. └─tidyr:::pivot_longer.data.frame(...)
5. └─tidyr::build_longer_spec(...)
6. └─tidyr:::str_separate(names, names_to, sep = names_sep, error_call = error_call)
7. └─tidyr:::str_split_fixed(...)
8. └─tidyr:::simplifyPieces(pieces, n, fill == "left")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
vector memory limit of 64.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘fluentGenomics.Rmd’
SUMMARY: processing the following file failed:
‘fluentGenomics.Rmd’
Error: Vignette re-building failed.
Execution halted