Back to Workflows build report for BioC 3.20

This page was generated on 2024-11-29 16:30 -0500 (Fri, 29 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4482
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4510
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 12/30HostnameOS / ArchINSTALLBUILD
fluentGenomics 1.18.0  (landing page)
Stuart Lee
Snapshot Date: 2024-11-29 12:45 -0500 (Fri, 29 Nov 2024)
git_url: https://git.bioconductor.org/packages/fluentGenomics
git_branch: RELEASE_3_20
git_last_commit: 51c0b4f
git_last_commit_date: 2024-10-29 10:03:20 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK  
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  

BUILD results for fluentGenomics on merida1

To the developers/maintainers of the fluentGenomics package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fluentGenomics
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
StartedAt: 2024-11-29 13:11:24 -0500 (Fri, 29 Nov 2024)
EndedAt: 2024-11-29 13:23:01 -0500 (Fri, 29 Nov 2024)
EllapsedTime: 696.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
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* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown

Quitting from lines 743-758 [line-chart] (fluentGenomics.Rmd)
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
vector memory limit of 64.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘fluentGenomics.Rmd’

SUMMARY: processing the following file failed:
  ‘fluentGenomics.Rmd’

Error: Vignette re-building failed.
Execution halted