Wenjie Sun
| Snapshot Date: 2025-03-19 13:40 -0400 (Wed, 19 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/CellBarcode |
| git_branch: devel |
| git_last_commit: 9c54c56 |
| git_last_commit_date: 2025-03-04 15:05:23 -0400 (Tue, 04 Mar 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-20 11:41 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4777 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4458 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 296/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CellBarcode 1.13.2 (landing page) Wenjie Sun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the CellBarcode package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CellBarcode |
| Version: 1.13.2 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL CellBarcode |
| StartedAt: 2025-03-19 16:26:13 -0400 (Wed, 19 Mar 2025) |
| EndedAt: 2025-03-19 16:26:24 -0400 (Wed, 19 Mar 2025) |
| EllapsedTime: 11.0 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL CellBarcode
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'CellBarcode' ...
** this is package 'CellBarcode' version '1.13.2'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
rm -Rf CellBarcode.dll ./rust/target/x86_64-pc-windows-gnu/release/libCellBarcode.a entrypoint.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c entrypoint.c -o entrypoint.o
mkdir -p ./rust/target/libgcc_mock
# `rustc` adds `-lgcc_eh` flags to the compiler, but Rtools' GCC doesn't have
# `libgcc_eh` due to the compilation settings. So, in order to please the
# compiler, we need to add empty `libgcc_eh` to the library search paths.
#
# For more details, please refer to
# https://github.com/r-windows/rtools-packages/blob/2407b23f1e0925bbb20a4162c963600105236318/mingw-w64-gcc/PKGBUILD#L313-L316
touch ./rust/target/libgcc_mock/libgcc_eh.a
# CARGO_LINKER is provided in Makevars.ucrt for R >= 4.2
if [ "" != "true" ]; then \
export CARGO_HOME=/e/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo; \
fi && \
export CARGO_TARGET_X86_64_PC_WINDOWS_GNU_LINKER="x86_64-w64-mingw32.static.posix-gcc.exe" && \
export LIBRARY_PATH="${LIBRARY_PATH};/e/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/./rust/target/libgcc_mock" && \
cargo build --target=x86_64-pc-windows-gnu --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
/bin/sh: line 6: cargo: command not found
make: *** [Makevars.win:24: rust/target/x86_64-pc-windows-gnu/release/libCellBarcode.a] Error 127
ERROR: compilation failed for package 'CellBarcode'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/CellBarcode'
* restoring previous 'E:/biocbuild/bbs-3.21-bioc/R/library/CellBarcode'