Multiple platform build/check report for BioC 3.21 - BUILD results for EnrichmentBrowser on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4777
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4545
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4458
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for EnrichmentBrowser on lconway

To the developers/maintainers of the EnrichmentBrowser package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichmentBrowser.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: EnrichmentBrowser

Version: 2.37.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser

StartedAt: 2025-03-20 16:45:47 -0400 (Thu, 20 Mar 2025)

EndedAt: 2025-03-20 16:48:08 -0400 (Thu, 20 Mar 2025)

EllapsedTime: 140.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser
###
##############################################################################
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* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* preparing ‘EnrichmentBrowser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnrichmentBrowser.Rmd’ using rmarkdown
2025-03-20 16:46:55.536 R[39453:455499770] XType: com.apple.fonts is not accessible.
2025-03-20 16:46:55.539 R[39453:455499770] XType: XTFontStaticRegistry is enabled.

Quitting from EnrichmentBrowser.Rmd:758-762 [ggea-graph]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `buildEdgeList()`:
! attempt to set index 48/48 in SET_STRING_ELT
---
Backtrace:
    ▆
 1. └─EnrichmentBrowser::ggeaGraph(...)
 2.   └─EnrichmentBrowser:::.plotGGEAGraph(g, show.scores = show.scores)
 3.     └─Rgraphviz::layoutGraph(graph)
 4.       └─Rgraphviz (local) layoutFun(x, ...)
 5.         └─Rgraphviz::agopen(...)
 6.           └─Rgraphviz::buildEdgeList(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EnrichmentBrowser.Rmd' failed with diagnostics:
attempt to set index 48/48 in SET_STRING_ELT
--- failed re-building ‘EnrichmentBrowser.Rmd’

SUMMARY: processing the following file failed:
  ‘EnrichmentBrowser.Rmd’

Error: Vignette re-building failed.
Execution halted