Shuye Pu
| Snapshot Date: 2025-01-28 13:40 -0500 (Tue, 28 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/GenomicPlot |
| git_branch: devel |
| git_last_commit: 2ccb4dc |
| git_last_commit_date: 2024-12-19 15:48:45 -0500 (Thu, 19 Dec 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-29 11:47 -0500 (Wed, 29 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4661 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4457 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4468 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4421 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4411 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 824/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicPlot 1.5.2 (landing page) Shuye Pu
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the GenomicPlot package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicPlot.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GenomicPlot |
| Version: 1.5.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicPlot |
| StartedAt: 2025-01-28 23:08:26 -0000 (Tue, 28 Jan 2025) |
| EndedAt: 2025-01-28 23:10:21 -0000 (Tue, 28 Jan 2025) |
| EllapsedTime: 115.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicPlot ### ############################################################################## ############################################################################## * checking for file ‘GenomicPlot/DESCRIPTION’ ... OK * preparing ‘GenomicPlot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GenomicPlot_vignettes.rmd’ using rmarkdown Warning: program compiled against libxml 212 using older 211 Quitting from lines 66-96 [metagene code] (GenomicPlot_vignettes.rmd) Error: processing vignette 'GenomicPlot_vignettes.rmd' failed with diagnostics: no applicable method for 'sendData' applied to an object of class "NULL" --- failed re-building ‘GenomicPlot_vignettes.rmd’ SUMMARY: processing the following file failed: ‘GenomicPlot_vignettes.rmd’ Error: Vignette re-building failed. Execution halted