Multiple platform build/check report for BioC 3.21 - INSTALL results for HEM on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4777
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4545
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4458
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for HEM on nebbiolo1

To the developers/maintainers of the HEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HEM

Version: 1.79.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL HEM

StartedAt: 2025-03-19 15:12:08 -0400 (Wed, 19 Mar 2025)

EndedAt: 2025-03-19 15:12:14 -0400 (Wed, 19 Mar 2025)

EllapsedTime: 6.4 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL HEM
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘HEM’ ...
** this is package ‘HEM’ version ‘1.79.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c hem.c -o hem.o
In file included from hem.c:17:
random4f.h: In function ‘gammadist’:
random4f.h:126:8: warning: old-style function definition [-Wold-style-definition]
  126 | double gammadist(alpha)
      |        ^~~~~~~~~
hem.c: In function ‘onelayerhem’:
hem.c:1390:19: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 1390 |         int i, j, k, m, n;
      |                   ^
hem.c: In function ‘chk_prt’:
hem.c:1593:16: warning: variable ‘l’ set but not used [-Wunused-but-set-variable]
 1593 |   int i, j, k, l;
      |                ^
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o HEM.so hem.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-HEM/00new/HEM/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEM)