Multiple platform build/check report for BioC 3.21 - BUILD results for MBCB on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4537
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4543
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4459
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MBCB on kunpeng2

To the developers/maintainers of the MBCB package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MBCB.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: MBCB

Version: 1.61.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MBCB

StartedAt: 2025-03-18 00:08:19 -0000 (Tue, 18 Mar 2025)

EndedAt: 2025-03-18 00:08:24 -0000 (Tue, 18 Mar 2025)

EllapsedTime: 5.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MBCB
###
##############################################################################
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* checking for file ‘MBCB/DESCRIPTION’ ... OK
* preparing ‘MBCB’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MBCB.Rnw’ using Sweave
Loading required package: tcltk
Warning: no DISPLAY variable so Tk is not available
Loading required package: tcltk2
Read 5 items
1 / 4  complete.
2 / 4  complete.
3 / 4  complete.
4 / 4  complete.
1 / 4  complete.
2 / 4  complete.
3 / 4  complete.
4 / 4  complete.
1 / 4  complete.
2 / 4  complete.
3 / 4  complete.
4 / 4  complete.
1 / 4  complete.
2 / 4  complete.
3 / 4  complete.
4 / 4  complete.
1 / 4  complete.
2 / 4  complete.
3 / 4  complete.
4 / 4  complete.

Error: processing vignette 'MBCB.Rnw' failed with diagnostics:
 chunk 11 (label = open GUI) 
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : 
  [tcl] invalid command name "toplevel".


--- failed re-building ‘MBCB.Rnw’

SUMMARY: processing the following file failed:
  ‘MBCB.Rnw’

Error: Vignette re-building failed.
Execution halted