Multiple platform build/check report for BioC 3.21 - BUILD results for RepViz on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4742
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4545
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4459
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for RepViz on kjohnson3

To the developers/maintainers of the RepViz package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RepViz.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RepViz

Version: 1.23.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RepViz

StartedAt: 2025-03-18 17:26:22 -0400 (Tue, 18 Mar 2025)

EndedAt: 2025-03-18 17:27:51 -0400 (Tue, 18 Mar 2025)

EllapsedTime: 89.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RepViz
###
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* checking for file ‘RepViz/DESCRIPTION’ ... OK
* preparing ‘RepViz’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RepViz.Rmd’ using rmarkdown
2025-03-18 17:26:33.406 R[48230:750510196] XType: Using static font registry.

Quitting from RepViz.Rmd:80-93 [plot_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.getAttributes()`:
! biomaRt error: looks like we're connecting to incompatible version of BioMart.
---
Backtrace:
    ▆
 1. └─RepViz::RepViz(...)
 2.   └─RepViz:::getBiomaRt(region, genome)
 3.     └─biomaRt::useMart(...)
 4.       └─biomaRt:::.useMart(...)
 5.         └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
 6.           └─biomaRt:::.getAttributes(mart, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RepViz.Rmd' failed with diagnostics:
biomaRt error: looks like we're connecting to incompatible version of BioMart.
--- failed re-building ‘RepViz.Rmd’

SUMMARY: processing the following file failed:
  ‘RepViz.Rmd’

Error: Vignette re-building failed.
Execution halted