Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4719
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4480
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4491
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4444
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-02-05 18:19:21 -0500 (Wed, 05 Feb 2025)

EndedAt: 2025-02-05 18:20:12 -0500 (Wed, 05 Feb 2025)

EllapsedTime: 50.6 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-02-05 18:19:36.026][biodb::testContext]
biodb.INFO [2025-02-05 18:19:36.027][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:19:36.028][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-02-05 18:19:36.028][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:19:36.028][biodb::testContext]
biodb.INFO [2025-02-05 18:19:36.029][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.029][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-02-05 18:19:36.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:36.030][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.068][biodb::testContext]
biodb.INFO [2025-02-05 18:19:36.068][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:19:36.068][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-05 18:19:36.069][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:19:36.069][biodb::testContext]
biodb.INFO [2025-02-05 18:19:36.072][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:19:36.073][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-05 18:19:36.076][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:19:36.076][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-05 18:19:36.076][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.078][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-05 18:19:36.087][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.089][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-05 18:19:36.089][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.090][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-05 18:19:36.090][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-05 18:19:36.090][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-05 18:19:36.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.091][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-05 18:19:36.092][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-05 18:19:36.092][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.093][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-05 18:19:36.093][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-05 18:19:36.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.094][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-05 18:19:36.094][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-05 18:19:36.095][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-05 18:19:36.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.096][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-05 18:19:36.096][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.097][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-05 18:19:36.097][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-05 18:19:36.097][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-05 18:19:36.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.098][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:19:36.098][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-05 18:19:36.099][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-05 18:19:36.099][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-05 18:19:36.099][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-05 18:19:36.099][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-05 18:19:36.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.100][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-05 18:19:36.101][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-05 18:19:36.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.101][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-05 18:19:36.102][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-05 18:19:36.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.103][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-05 18:19:36.103][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-05 18:19:36.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.107][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-05 18:19:36.107][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-05 18:19:36.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.109][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-05 18:19:36.109][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-05 18:19:36.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.110][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:19:36.110][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-05 18:19:36.117][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-05 18:19:36.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.118][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-05 18:19:36.118][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-05 18:19:36.118][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-05 18:19:36.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.121][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-05 18:19:36.133][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.138][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-05 18:19:36.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.138][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:19:36.138][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.139][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.139][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.139][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.140][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:19:36.140][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:19:36.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.140][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:19:36.141][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:19:36.142][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:19:36.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:19:36.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.143][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.147][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.147][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-05 18:19:36.148][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.148][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:19:36.148][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.148][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:19:36.149][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.149][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.149][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.149][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.150][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:19:36.150][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:19:36.150][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.150][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:19:36.151][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:19:36.152][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:19:36.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.152][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.152][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:19:36.153][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.153][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.153][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.154][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.154][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.155][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-05 18:19:36.155][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.155][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-05 18:19:36.156][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.156][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:19:36.156][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.157][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.157][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.157][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.157][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:19:36.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:19:36.158][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.158][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-05 18:19:36.158][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:19:36.159][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.159][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.159][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.159][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:19:36.159][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.160][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:19:36.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.161][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.161][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.161][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.161][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.162][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.162][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.162][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-05 18:19:36.163][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.163][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:19:36.163][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.163][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:19:36.164][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.164][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.165][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:19:36.165][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:19:36.165][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.165][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-05 18:19:36.166][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:19:36.166][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.166][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.166][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.167][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:19:36.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.167][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.167][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:19:36.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.168][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.168][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.168][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.169][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.169][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.169][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.171][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:19:36.171][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.191][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-05 18:19:36.193][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-05 18:19:36.196][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-05 18:19:36.196][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-05 18:19:36.197][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-05 18:19:36.197][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:19:36.198][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-05 18:19:36.198][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-05 18:19:36.198][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-05 18:19:36.199][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:19:36.199][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:19:36.200][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-05 18:19:36.200][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-05 18:19:36.200][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-05 18:19:36.201][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-05 18:19:36.201][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:19:36.202][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-05 18:19:36.202][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-05 18:19:36.202][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-05 18:19:36.203][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-05 18:19:36.203][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-05 18:19:36.203][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-05 18:19:36.204][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-05 18:19:36.204][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-05 18:19:36.205][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-05 18:19:36.205][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-05 18:19:36.205][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-05 18:19:36.206][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-05 18:19:36.206][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-05 18:19:36.207][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-05 18:19:36.207][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-05 18:19:36.207][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-05 18:19:36.208][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-05 18:19:36.208][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-05 18:19:36.208][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-05 18:19:36.209][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-05 18:19:36.209][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-05 18:19:36.210][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-05 18:19:36.210][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-05 18:19:36.210][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-05 18:19:36.211][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-05 18:19:36.211][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-05 18:19:36.211][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-05 18:19:36.212][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-05 18:19:36.212][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-05 18:19:36.213][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-05 18:19:36.213][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-05 18:19:36.213][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-05 18:19:36.214][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-05 18:19:36.214][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-05 18:19:36.215][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-05 18:19:36.215][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-05 18:19:36.215][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-05 18:19:36.216][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-05 18:19:36.216][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-05 18:19:36.216][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-05 18:19:36.217][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-05 18:19:36.217][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-05 18:19:36.218][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-05 18:19:36.218][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-05 18:19:36.218][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-05 18:19:36.219][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-05 18:19:36.219][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-05 18:19:36.219][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-05 18:19:36.220][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-05 18:19:36.220][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-05 18:19:36.220][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-05 18:19:36.221][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-05 18:19:36.221][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-05 18:19:36.222][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-05 18:19:36.222][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-05 18:19:36.222][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-05 18:19:36.223][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-05 18:19:36.223][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-05 18:19:36.223][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-05 18:19:36.224][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-05 18:19:36.224][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-05 18:19:36.224][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-05 18:19:36.225][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-05 18:19:36.225][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-05 18:19:36.225][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-05 18:19:36.226][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-05 18:19:36.226][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-05 18:19:36.228][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-05 18:19:36.228][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:19:36.230][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:19:36.230][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.230][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:19:36.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:19:36.274][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-05 18:19:36.277][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:19:36.277][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.278][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.278][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.278][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:19:36.279][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.279][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-05 18:19:36.279][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.279][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.280][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-05 18:19:36.280][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:19:36.280][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.280][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-05 18:19:36.281][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.282][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:19:36.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:19:36.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:19:36.283][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:19:36.283][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:19:36.283][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-05 18:19:36.284][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.284][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.284][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-05 18:19:36.284][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:19:36.286][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-05 18:19:36.287][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:19:36.287][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:19:36.288][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:19:36.288][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:19:36.298][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:19:36.298][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-05 18:19:36.299][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:19:36.301][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:19:36.302][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:19:36.303][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:19:36.303][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-05 18:19:36.303][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-05 18:19:36.304][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:19:36.304][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-05 18:19:36.304][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:19:36.304][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:19:36.304][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-05 18:19:36.305][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-05 18:19:36.305][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:19:36.313][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:19:36.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:19:36.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:19:36.314][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:19:36.315][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:19:36.315][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-05 18:19:36.318][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.318][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-05 18:19:36.319][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:36.319][biodb::testThat]
biodb.TRACE[2025-02-05 18:19:36.321][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-02-05 18:19:36.321][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:19:36.322][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:19:36.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:19:36.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:19:36.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.340][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.340][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.350][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.350][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.352][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.352][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.356][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.357][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.358][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.385][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.385][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.389][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:19:36.389][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:19:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.408][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.433][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:19:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:19:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.493][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-05 18:19:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.533][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.534][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.540][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.548][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.548][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.579][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.586][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.589][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.589][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.598][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.606][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.607][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.622][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.622][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.632][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.632][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.639][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.639][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.667][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.673][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.673][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.680][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.680][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.682][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.682][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.687][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.687][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.689][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.690][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.691][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.692][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.694][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.694][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.696][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.697][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.719][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.720][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.722][ef$get] fields variable is a list.
biodb.INFO [2025-02-05 18:19:36.725][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.725][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-05 18:19:36.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:36.726][biodb::testThat]
biodb.DEBUG[2025-02-05 18:19:36.730][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-05 18:19:36.733][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-05 18:19:36.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-05 18:19:36.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-05 18:19:36.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-05 18:19:36.737][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-05 18:19:36.737][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:19:36.745][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:19:36.745][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:19:36.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:19:36.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:19:36.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:19:36.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:19:36.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:19:36.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:19:36.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:19:36.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.752][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.752][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.754][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.755][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.756][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.757][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.761][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.761][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.766][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.766][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.770][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.771][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.773][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.773][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.785][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.785][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.789][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:19:36.790][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:19:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:19:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:19:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:19:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:19:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:19:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:19:36.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:19:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:19:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:19:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:19:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:19:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:19:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:19:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:19:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.845][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:19:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:19:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:19:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:19:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:19:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.860][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:19:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:19:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:19:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.869][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-05 18:19:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-05 18:19:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-05 18:19:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-05 18:19:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-05 18:19:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-05 18:19:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-05 18:19:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-05 18:19:36.878][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.878][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-05 18:19:36.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:36.879][biodb::testThat]
biodb.TRACE[2025-02-05 18:19:36.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.881][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.881][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-02-05 18:19:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.894][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-02-05 18:19:36.894][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-05 18:19:36.894][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-05 18:19:36.894][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-05 18:19:36.895][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.895][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.896][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:19:36.896][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.896][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:19:36.896][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:19:36.897][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:19:36.897][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:19:36.897][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:19:36.898][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:19:36.898][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:19:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.902][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:19:36.902][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:19:36.903][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-05 18:19:36.906][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.906][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.907][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.907][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-02-05 18:19:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.918][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-02-05 18:19:36.935][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-05 18:19:36.935][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-05 18:19:36.936][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-05 18:19:36.940][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.940][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.941][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:19:36.941][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.941][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:19:36.946][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:19:36.946][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:19:36.947][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:19:36.947][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:19:36.947][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:19:36.947][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:19:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:19:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:19:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.954][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:19:36.955][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:19:36.955][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-05 18:19:36.959][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.959][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.960][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.960][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-02-05 18:19:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.969][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-02-05 18:19:36.969][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-02-05 18:19:36.969][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-05 18:19:36.970][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-05 18:19:36.970][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.970][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:19:36.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.972][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:19:36.972][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:19:36.972][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:19:36.973][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:19:36.973][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:19:36.973][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:19:36.973][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:19:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:19:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.978][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:19:36.978][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:19:36.979][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-02-05 18:19:36.984][biodb::testThat]
biodb.INFO [2025-02-05 18:19:36.984][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-05 18:19:36.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:36.985][biodb::testThat]
biodb.TRACE[2025-02-05 18:19:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:36.995][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-05 18:19:36.995][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-05 18:19:36.996][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-05 18:19:36.996][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.996][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:36.997][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:19:37.000][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:19:37.000][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:19:37.000][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:19:37.001][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:19:37.001][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:19:37.001][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:19:37.001][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:19:37.002][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:19:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:19:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:19:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:19:37.006][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:19:37.007][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-02-05 18:19:37.012][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.012][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-05 18:19:37.012][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:37.013][biodb::testThat]
biodb.TRACE[2025-02-05 18:19:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-05 18:19:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-05 18:19:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:19:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-05 18:19:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:19:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-05 18:19:37.045][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.045][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-05 18:19:37.046][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:37.046][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.048][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.049][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-05 18:19:37.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:37.049][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.052][biodb::testThat]
biodb.INFO [2025-02-05 18:19:37.052][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-05 18:19:37.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:37.053][biodb::testThat]
biodb.DEBUG[2025-02-05 18:19:37.054][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-02-05 18:19:57.565][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-02-05 18:19:57.601][biodb::testThat]
biodb.INFO [2025-02-05 18:19:57.602][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-05 18:19:57.602][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:19:57.602][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.094][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-02-05 18:20:09.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.115][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.115][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.116][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.116][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.117][ef$get] fields variable is a list.
biodb.INFO [2025-02-05 18:20:09.117][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.117][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-02-05 18:20:09.118][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.118][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.118][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-05 18:20:09.135][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-02-05 18:20:09.138][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-02-05 18:20:09.138][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-02-05 18:20:09.150][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-02-05 18:20:09.151][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-02-05 18:20:09.151][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-02-05 18:20:09.151][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-02-05 18:20:09.154][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-02-05 18:20:09.156][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-02-05 18:20:09.156][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-02-05 18:20:09.161][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/markere67f415577ecmarker".
biodb.TRACE[2025-02-05 18:20:09.165][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-02-05 18:20:09.170][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-02-05 18:20:09.174][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-05 18:20:09.175][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-02-05 18:20:09.175][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-02-05 18:20:09.176][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-02-05 18:20:09.177][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2025-02-05 18:20:09.182][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-02-05 18:20:09.182][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-02-05 18:20:09.183][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-02-05 18:20:09.183][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2025-02-05 18:20:09.187][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-02-05 18:20:09.187][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-05 18:20:09.188][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-02-05 18:20:09.188][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-02-05 18:20:09.189][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/markere67f52344876marker".
biodb.TRACE[2025-02-05 18:20:09.189][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-02-05 18:20:09.189][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-02-05 18:20:09.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-05 18:20:09.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-05 18:20:09.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-05 18:20:09.195][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:20:09.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.196][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:20:09.196][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:20:09.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:09.219][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-05 18:20:09.220][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-05 18:20:09.225][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.226][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-05 18:20:09.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.226][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.229][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-02-05 18:20:09.229][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-02-05 18:20:09.229][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-05 18:20:09.230][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.230][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-05 18:20:09.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-02-05 18:20:09.231][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-05 18:20:09.231][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-05 18:20:09.232][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:20:09.232][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.232][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:20:09.233][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:20:09.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.237][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:09.244][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-05 18:20:09.244][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-05 18:20:09.244][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-02-05 18:20:09.251][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.251][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-02-05 18:20:09.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.252][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.259][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.259][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-02-05 18:20:09.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.260][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.260][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.261][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.261][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:09.261][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.262][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:09.262][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:09.262][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:09.263][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:09.263][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-02-05 18:20:09.265][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.265][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-02-05 18:20:09.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.266][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.267][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.267][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.267][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:09.268][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.268][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:09.268][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:09.269][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:09.269][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:09.269][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-02-05 18:20:09.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.273][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.273][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.274][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.274][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.274][ef$get] fields variable is a list.
biodb.INFO [2025-02-05 18:20:09.275][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-05 18:20:09.275][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-05 18:20:09.277][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-05 18:20:09.277][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-05 18:20:09.278][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.278][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.279][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-05 18:20:09.280][biodb::testContext]
biodb.INFO [2025-02-05 18:20:09.283][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:20:09.283][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-02-05 18:20:09.283][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:20:09.284][biodb::testContext]
biodb.INFO [2025-02-05 18:20:09.285][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:20:09.286][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-05 18:20:09.287][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.287][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-05 18:20:09.288][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.288][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-05 18:20:09.289][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.290][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-05 18:20:09.290][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.291][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-05 18:20:09.291][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-05 18:20:09.291][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.292][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-05 18:20:09.292][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-05 18:20:09.293][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.293][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-05 18:20:09.294][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.295][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-05 18:20:09.295][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-05 18:20:09.295][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-05 18:20:09.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.296][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-05 18:20:09.296][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.297][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-05 18:20:09.297][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-05 18:20:09.297][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.298][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:20:09.299][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-05 18:20:09.299][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-05 18:20:09.299][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-05 18:20:09.299][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-05 18:20:09.300][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-05 18:20:09.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.300][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-05 18:20:09.301][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-05 18:20:09.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.301][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-05 18:20:09.302][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-05 18:20:09.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.303][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-05 18:20:09.303][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.304][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-05 18:20:09.304][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-05 18:20:09.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.305][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-05 18:20:09.305][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-05 18:20:09.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.306][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:20:09.306][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-05 18:20:09.312][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-05 18:20:09.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.313][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-05 18:20:09.313][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-05 18:20:09.314][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-05 18:20:09.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.315][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-05 18:20:09.315][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.322][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-05 18:20:09.322][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.323][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.323][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.323][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.323][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.324][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:20:09.324][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.324][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.324][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:20:09.325][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:20:09.326][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.326][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.327][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.327][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.328][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.328][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.328][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-05 18:20:09.329][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.329][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:20:09.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.330][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.330][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.331][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.331][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:20:09.331][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.331][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.332][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-05 18:20:09.332][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.332][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.332][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.333][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.333][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.334][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.334][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.334][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.335][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.335][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.335][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.335][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.336][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-05 18:20:09.336][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.336][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-05 18:20:09.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.337][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.337][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.337][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.338][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:20:09.338][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.338][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.339][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-05 18:20:09.339][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.339][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.339][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.339][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.340][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.341][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.341][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.342][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.342][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.342][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.342][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-05 18:20:09.343][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.343][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:20:09.345][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.346][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.346][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.346][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.347][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.347][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:20:09.347][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.347][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.348][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-05 18:20:09.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.348][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.348][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.348][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.349][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.349][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.350][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.350][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.350][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.351][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.351][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.351][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.351][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.352][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.372][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-05 18:20:09.372][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-05 18:20:09.372][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-05 18:20:09.373][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-05 18:20:09.373][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-05 18:20:09.373][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:20:09.374][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-05 18:20:09.374][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-05 18:20:09.374][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-05 18:20:09.375][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:20:09.375][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:20:09.375][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-05 18:20:09.376][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-05 18:20:09.376][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-05 18:20:09.376][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-05 18:20:09.377][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:20:09.377][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-05 18:20:09.377][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-05 18:20:09.378][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-05 18:20:09.378][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-05 18:20:09.378][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-05 18:20:09.379][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-05 18:20:09.379][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-05 18:20:09.379][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-05 18:20:09.380][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-05 18:20:09.380][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-05 18:20:09.380][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-05 18:20:09.381][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-05 18:20:09.381][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-05 18:20:09.381][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-05 18:20:09.382][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-05 18:20:09.382][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-05 18:20:09.382][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-05 18:20:09.383][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-05 18:20:09.383][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-05 18:20:09.383][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-05 18:20:09.384][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-05 18:20:09.384][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-05 18:20:09.385][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-05 18:20:09.385][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-05 18:20:09.385][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-05 18:20:09.386][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-05 18:20:09.386][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-05 18:20:09.386][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-05 18:20:09.387][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-05 18:20:09.387][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-05 18:20:09.387][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-05 18:20:09.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-05 18:20:09.388][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-05 18:20:09.388][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-05 18:20:09.389][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-05 18:20:09.389][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-05 18:20:09.389][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-05 18:20:09.390][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-05 18:20:09.390][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-05 18:20:09.390][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-05 18:20:09.391][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-05 18:20:09.391][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-05 18:20:09.391][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-05 18:20:09.392][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-05 18:20:09.392][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-05 18:20:09.392][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-05 18:20:09.393][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-05 18:20:09.393][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-05 18:20:09.393][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-05 18:20:09.393][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-05 18:20:09.394][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-05 18:20:09.394][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-05 18:20:09.394][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-05 18:20:09.395][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-05 18:20:09.395][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-05 18:20:09.396][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-05 18:20:09.396][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-05 18:20:09.398][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-05 18:20:09.399][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-05 18:20:09.399][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-05 18:20:09.400][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-05 18:20:09.400][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-05 18:20:09.400][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-05 18:20:09.401][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-05 18:20:09.401][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-05 18:20:09.401][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-05 18:20:09.402][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-05 18:20:09.402][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-05 18:20:09.402][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:20:09.403][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.403][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.403][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.431][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-05 18:20:09.432][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.432][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.432][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.433][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.433][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.433][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.433][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-05 18:20:09.434][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.434][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.434][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-05 18:20:09.434][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-05 18:20:09.435][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-05 18:20:09.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.437][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.437][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.438][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.438][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:20:09.438][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-05 18:20:09.438][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.438][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.438][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.439][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.439][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-05 18:20:09.439][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:20:09.440][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:20:09.440][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:20:09.440][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:20:09.441][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.442][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-05 18:20:09.442][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.442][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.443][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.443][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.443][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-05 18:20:09.443][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-05 18:20:09.444][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:20:09.444][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-05 18:20:09.444][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.444][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.444][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-05 18:20:09.445][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-05 18:20:09.445][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.445][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.445][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.446][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.446][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.446][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.447][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-05 18:20:09.447][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.447][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-02-05 18:20:09.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.448][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.450][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:09.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.450][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:09.450][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:09.451][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:09.451][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:09.451][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:20:09.454][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-05 18:20:09.456][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.456][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-02-05 18:20:09.457][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.457][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.457][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-05 18:20:09.457][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-05 18:20:09.458][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.458][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-05 18:20:09.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-05 18:20:09.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-05 18:20:09.460][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-05 18:20:09.460][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:20:09.460][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:20:09.460][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:20:09.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:09.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.467][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.467][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.469][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.469][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.471][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.471][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.475][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.475][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.480][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.481][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.486][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.494][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.496][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.496][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.497][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.500][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.500][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.501][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.505][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.506][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.507][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.508][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.508][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.528][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.551][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.570][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:09.578][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-05 18:20:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-05 18:20:09.584][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-05 18:20:09.584][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-05 18:20:09.584][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-05 18:20:09.584][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-05 18:20:09.585][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.585][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.586][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-05 18:20:09.587][biodb::testContext]
biodb.INFO [2025-02-05 18:20:09.587][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:20:09.588][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-02-05 18:20:09.588][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-05 18:20:09.588][biodb::testContext]
biodb.INFO [2025-02-05 18:20:09.590][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:20:09.590][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-05 18:20:09.592][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.592][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-05 18:20:09.592][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.595][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-05 18:20:09.596][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.597][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-05 18:20:09.597][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.598][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-05 18:20:09.598][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-05 18:20:09.598][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.599][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-05 18:20:09.599][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-05 18:20:09.600][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.600][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-05 18:20:09.601][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.601][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-05 18:20:09.602][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-05 18:20:09.602][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-05 18:20:09.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.603][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-05 18:20:09.603][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.604][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-05 18:20:09.604][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-05 18:20:09.604][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-05 18:20:09.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.605][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:20:09.605][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-05 18:20:09.606][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-05 18:20:09.606][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-05 18:20:09.606][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-05 18:20:09.606][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-05 18:20:09.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.607][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-05 18:20:09.608][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-05 18:20:09.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.608][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-05 18:20:09.609][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-05 18:20:09.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.609][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-05 18:20:09.610][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-05 18:20:09.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.611][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-05 18:20:09.611][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-05 18:20:09.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.612][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-05 18:20:09.612][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-05 18:20:09.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.613][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-05 18:20:09.613][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-05 18:20:09.619][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-05 18:20:09.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.620][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-05 18:20:09.620][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-05 18:20:09.621][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-05 18:20:09.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.622][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-05 18:20:09.622][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.622][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-05 18:20:09.623][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.623][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.623][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.624][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.624][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.624][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:20:09.624][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.624][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.625][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-05 18:20:09.625][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.625][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.627][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:20:09.628][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.629][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.629][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.629][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.629][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.629][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.630][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.630][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.630][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.630][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.631][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.631][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.631][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-05 18:20:09.632][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.632][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:20:09.632][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.632][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.633][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.633][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.633][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.633][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.633][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:20:09.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.634][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.634][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-05 18:20:09.634][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-05 18:20:09.635][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.636][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.636][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.636][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.637][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.637][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.637][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.637][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.638][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.638][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.638][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-05 18:20:09.639][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.639][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-05 18:20:09.639][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.639][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.639][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.640][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.640][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.640][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.640][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-05 18:20:09.641][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.641][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.641][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-05 18:20:09.641][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.642][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.642][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.642][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.642][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.643][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.643][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.643][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.644][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.644][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.644][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.644][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.644][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.645][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.645][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-05 18:20:09.645][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.646][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-05 18:20:09.646][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.646][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.646][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.647][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.647][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.647][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.647][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-05 18:20:09.648][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.648][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.648][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-05 18:20:09.648][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.649][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.649][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.649][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.649][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-05 18:20:09.649][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.650][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.650][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.651][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.651][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.651][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.651][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.652][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.654][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.654][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.672][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-05 18:20:09.673][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-05 18:20:09.673][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-05 18:20:09.673][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-05 18:20:09.674][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-05 18:20:09.674][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:20:09.674][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-05 18:20:09.675][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-05 18:20:09.675][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-05 18:20:09.675][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:20:09.676][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:20:09.676][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-05 18:20:09.676][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-05 18:20:09.677][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-05 18:20:09.677][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-05 18:20:09.677][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:20:09.680][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-05 18:20:09.680][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-05 18:20:09.680][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-05 18:20:09.681][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-05 18:20:09.681][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-05 18:20:09.681][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-05 18:20:09.682][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-05 18:20:09.682][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-05 18:20:09.682][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-05 18:20:09.683][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-05 18:20:09.683][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-05 18:20:09.683][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-05 18:20:09.684][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-05 18:20:09.684][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-05 18:20:09.684][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-05 18:20:09.685][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-05 18:20:09.685][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-05 18:20:09.685][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-05 18:20:09.686][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-05 18:20:09.686][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-05 18:20:09.686][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-05 18:20:09.687][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-05 18:20:09.687][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-05 18:20:09.687][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-05 18:20:09.688][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-05 18:20:09.688][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-05 18:20:09.688][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-05 18:20:09.689][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-05 18:20:09.689][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-05 18:20:09.690][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-05 18:20:09.690][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-05 18:20:09.690][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-05 18:20:09.691][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-05 18:20:09.691][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-05 18:20:09.691][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-05 18:20:09.692][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-05 18:20:09.692][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-05 18:20:09.692][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-05 18:20:09.693][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-05 18:20:09.693][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-05 18:20:09.693][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-05 18:20:09.694][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-05 18:20:09.694][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-05 18:20:09.694][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-05 18:20:09.695][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-05 18:20:09.695][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-05 18:20:09.695][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-05 18:20:09.696][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-05 18:20:09.696][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-05 18:20:09.696][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-05 18:20:09.697][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-05 18:20:09.697][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-05 18:20:09.697][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-05 18:20:09.698][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-05 18:20:09.698][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-05 18:20:09.698][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-05 18:20:09.699][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-05 18:20:09.699][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-05 18:20:09.699][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-05 18:20:09.700][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-05 18:20:09.700][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-05 18:20:09.700][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-05 18:20:09.701][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-05 18:20:09.701][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-05 18:20:09.701][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-05 18:20:09.702][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-05 18:20:09.702][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-05 18:20:09.702][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-05 18:20:09.703][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-05 18:20:09.703][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-05 18:20:09.703][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.706][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-05 18:20:09.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.734][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-05 18:20:09.734][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.735][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.735][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.736][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-05 18:20:09.736][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.736][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-05 18:20:09.736][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.737][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-05 18:20:09.737][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-05 18:20:09.737][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-05 18:20:09.738][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-05 18:20:09.739][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-05 18:20:09.739][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-05 18:20:09.739][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-05 18:20:09.739][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-05 18:20:09.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.740][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-05 18:20:09.740][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-05 18:20:09.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-05 18:20:09.740][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-05 18:20:09.740][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:20:09.740][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-05 18:20:09.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.741][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.741][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-05 18:20:09.741][self$setPropertyValue]
biodb.DEBUG[2025-02-05 18:20:09.742][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-05 18:20:09.742][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-05 18:20:09.742][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-05 18:20:09.743][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-05 18:20:09.743][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-05 18:20:09.744][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.744][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-05 18:20:09.745][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.745][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.745][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.745][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.746][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-05 18:20:09.746][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-05 18:20:09.746][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-05 18:20:09.746][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-05 18:20:09.747][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-05 18:20:09.747][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-05 18:20:09.747][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-05 18:20:09.747][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-05 18:20:09.747][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-05 18:20:09.748][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.748][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.748][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.749][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-05 18:20:09.749][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-05 18:20:09.749][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-05 18:20:09.750][biodb::testThat]
biodb.INFO [2025-02-05 18:20:09.750][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-02-05 18:20:09.750][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-05 18:20:09.750][biodb::testThat]
biodb.DEBUG[2025-02-05 18:20:09.751][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-05 18:20:09.751][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-05 18:20:09.751][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-05 18:20:09.752][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.753][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:09.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.754][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:09.754][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:09.754][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:09.755][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:09.755][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:20:09.755][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:20:09.755][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-02-05 18:20:09.756][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-05 18:20:09.756][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-05 18:20:09.756][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.757][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-05 18:20:09.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-05 18:20:09.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-05 18:20:09.761][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-05 18:20:09.761][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:20:09.761][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:20:09.762][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:20:09.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:09.766][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.768][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.769][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.770][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.771][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.771][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.772][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.773][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.773][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.776][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.776][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.782][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.782][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.784][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.784][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.786][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.798][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.798][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.800][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.802][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.802][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.803][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.808][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.866][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.875][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:09.883][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-05 18:20:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:09.887][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:20:09.888][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:20:09.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:09.891][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-05 18:20:09.892][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-05 18:20:09.892][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:09.892][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-05 18:20:09.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-05 18:20:09.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-05 18:20:09.894][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-05 18:20:09.894][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-05 18:20:09.894][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-05 18:20:09.895][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-05 18:20:09.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:09.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:09.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:09.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:09.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:09.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:09.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:09.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.904][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.904][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.905][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.906][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.906][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.908][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.908][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.912][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.912][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.914][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.918][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.918][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.920][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.920][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.922][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.932][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.934][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.934][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.935][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.938][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.938][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-05 18:20:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.944][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-05 18:20:09.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-05 18:20:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-05 18:20:09.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-05 18:20:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-05 18:20:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-05 18:20:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-05 18:20:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:09.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-05 18:20:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-05 18:20:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-05 18:20:09.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-05 18:20:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-05 18:20:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-05 18:20:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-05 18:20:09.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-05 18:20:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-05 18:20:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-05 18:20:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:09.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-05 18:20:10.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-05 18:20:10.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:10.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:10.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:10.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-05 18:20:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-05 18:20:10.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-05 18:20:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-05 18:20:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-05 18:20:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.018][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-05 18:20:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.024][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:20:10.025][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:20:10.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:10.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:10.029][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-05 18:20:10.030][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-05 18:20:10.030][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-05 18:20:10.030][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.031][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:10.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.032][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:10.032][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:10.032][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:10.032][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:10.033][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:20:10.033][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:20:10.033][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:20:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.043][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:20:10.044][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:20:10.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:10.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.054][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-05 18:20:10.054][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:20:10.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:10.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-05 18:20:10.058][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-05 18:20:10.058][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-05 18:20:10.059][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-05 18:20:10.059][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.060][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.060][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-05 18:20:10.060][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-05 18:20:10.060][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-05 18:20:10.061][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-05 18:20:10.061][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-05 18:20:10.061][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-05 18:20:10.062][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-05 18:20:10.062][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-05 18:20:10.062][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-05 18:20:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.072][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-05 18:20:10.072][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-02-05 18:20:10.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:10.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-05 18:20:10.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-05 18:20:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-05 18:20:10.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-05 18:20:10.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-05 18:20:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-05 18:20:10.082][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-05 18:20:10.083][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-05 18:20:10.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-05 18:20:10.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-05 18:20:10.088][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-05 18:20:10.088][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-05 18:20:10.088][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-05 18:20:10.089][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-05 18:20:10.089][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-05 18:20:10.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-05 18:20:10.089][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-05 18:20:10.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-05 18:20:10.090][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-05 18:20:10.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.632   0.201  34.887

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings