| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-18 11:41 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4537 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4543 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1016/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| idpr 1.17.0 (landing page) William M. McFadden
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the idpr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/idpr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: idpr |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data idpr |
| StartedAt: 2025-03-17 18:10:38 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 18:11:41 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 62.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data idpr
###
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* checking for file ‘idpr/DESCRIPTION’ ... OK
* preparing ‘idpr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chargeHydropathy-vignette.Rmd’ using rmarkdown
--- finished re-building ‘chargeHydropathy-vignette.Rmd’
--- re-building ‘disorderedMatrices-vignette.Rmd’ using rmarkdown
Quitting from disorderedMatrices-vignette.Rmd:276-291 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `unlist()`:
! 'recursive' must be a length-1 vector
---
Backtrace:
▆
1. ├─pwalign::pairwiseAlignment(...)
2. └─pwalign::pairwiseAlignment(...)
3. └─pwalign (local) .local(pattern, subject, ...)
4. └─pwalign:::mpi.XStringSet.pairwiseAlignment(...)
5. └─pwalign:::XStringSet.pairwiseAlignment(...)
6. ├─base::array(...)
7. └─base::unlist(substitutionMatrix, substitutionMatrix)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'disorderedMatrices-vignette.Rmd' failed with diagnostics:
'recursive' must be a length-1 vector
--- failed re-building ‘disorderedMatrices-vignette.Rmd’
--- re-building ‘idpr-vignette.Rmd’ using rmarkdown
--- finished re-building ‘idpr-vignette.Rmd’
--- re-building ‘iupred-vignette.Rmd’ using rmarkdown
--- finished re-building ‘iupred-vignette.Rmd’
--- re-building ‘sequenceMAP-vignette.Rmd’ using rmarkdown
--- finished re-building ‘sequenceMAP-vignette.Rmd’
--- re-building ‘structuralTendency-vignette.Rmd’ using rmarkdown
--- finished re-building ‘structuralTendency-vignette.Rmd’
SUMMARY: processing the following file failed:
‘disorderedMatrices-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted