Multiple platform build/check report for BioC 3.21 - BUILD results for knowYourCG on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4661
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4457
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4468
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4421
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4411
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for knowYourCG on kunpeng2

To the developers/maintainers of the knowYourCG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/knowYourCG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: knowYourCG

Version: 1.3.15

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG

StartedAt: 2025-01-28 23:53:12 -0000 (Tue, 28 Jan 2025)

EndedAt: 2025-01-28 23:56:18 -0000 (Tue, 28 Jan 2025)

EllapsedTime: 186.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG
###
##############################################################################
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* checking for file ‘knowYourCG/DESCRIPTION’ ... OK
* preparing ‘knowYourCG’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Array.Rmd’ using rmarkdown

Quitting from lines 245-250 [ky18] (Array.Rmd)
Error: processing vignette 'Array.Rmd' failed with diagnostics:
There's an issue with your request to g:Profiler.
Error code: 301.
Please double check your input. If this doesn't help, then check your internet connection or contact us with a reproducible example on biit.support@ut.ee
--- failed re-building ‘Array.Rmd’

--- re-building ‘Continuous.Rmd’ using rmarkdown
--- finished re-building ‘Continuous.Rmd’

--- re-building ‘Sequencing.Rmd’ using rmarkdown
trying URL 'https://github.com/zhou-lab/KYCGKB_mm10/raw/refs/heads/main/ChromHMM.20220414.cm'
Content type 'application/octet-stream' length 877986 bytes (857 KB)
==================================================
downloaded 857 KB

trying URL 'https://github.com/zhou-lab/YAME/raw/refs/heads/main/test/input/single_cell_10_samples.cg'
Content type 'application/octet-stream' length 11610328 bytes (11.1 MB)
==================================================
downloaded 11.1 MB

--- finished re-building ‘Sequencing.Rmd’

SUMMARY: processing the following file failed:
  ‘Array.Rmd’

Error: Vignette re-building failed.
Execution halted