Multiple platform build/check report for BioC 3.21 - BUILD BIN results for makecdfenv on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4716
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4478
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4489
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4442
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for makecdfenv on palomino7

To the developers/maintainers of the makecdfenv package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/makecdfenv.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: makecdfenv

Version: 1.83.1

Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=makecdfenv.buildbin-libdir makecdfenv_1.83.1.tar.gz

StartedAt: 2025-02-04 08:17:24 -0500 (Tue, 04 Feb 2025)

EndedAt: 2025-02-04 08:18:04 -0500 (Tue, 04 Feb 2025)

EllapsedTime: 39.5 seconds

RetCode: 0

Status: OK

PackageFile: makecdfenv_1.83.1.zip

PackageFileSize: 3.347 MiB

Command output

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### Running command:
###
###   rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=makecdfenv.buildbin-libdir makecdfenv_1.83.1.tar.gz
###
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* installing *source* package 'makecdfenv' ...
** this is package 'makecdfenv' version '1.83.1'
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc   -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'readQC':
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
  576 |   int typeQC;
      |       ^~~~~~
gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -lz -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/makecdfenv.buildbin-libdir/00LOCK-makecdfenv/00new/makecdfenv/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'makecdfenv' as makecdfenv_1.83.1.zip
* DONE (makecdfenv)