Benilton Carvalho
| Snapshot Date: 2025-03-19 13:40 -0400 (Wed, 19 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/oligo |
| git_branch: devel |
| git_last_commit: e073acb |
| git_last_commit_date: 2025-03-08 15:38:43 -0400 (Sat, 08 Mar 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-20 11:40 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4777 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4458 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1454/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| oligo 1.71.7 (landing page) Benilton Carvalho
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the oligo package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oligo.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: oligo |
| Version: 1.71.7 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL oligo |
| StartedAt: 2025-03-19 15:19:51 -0400 (Wed, 19 Mar 2025) |
| EndedAt: 2025-03-19 15:20:24 -0400 (Wed, 19 Mar 2025) |
| EllapsedTime: 33.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL oligo ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘oligo’ ... ** this is package ‘oligo’ version ‘1.71.7’ ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... gcc -std=gnu2x -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c DABG.c -o DABG.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c ParserGzXYS.c -o ParserGzXYS.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c ParserXYS.c -o ParserXYS.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c baseProfile.c -o baseProfile.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c basecontent.c -o basecontent.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c chipbackground.c -o chipbackground.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c mas5calls.c -o mas5calls.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c rma2.c -o rma2.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c rma_common.c -o rma_common.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic -g -O2 -Wall -Werror=format-security -c trimmed.c -o trimmed.o gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o oligo.so DABG.o ParserGzXYS.o ParserXYS.o baseProfile.o basecontent.o chipbackground.o mas5calls.o rma2.o rma_common.o trimmed.o -lz -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-oligo/00new/oligo/libs ** R ** inst ** byte-compile and prepare package for lazy loading Note: in method for ‘pm<-’ with signature ‘object="TilingFeatureSet",subset="ANY",target="ANY",value="array"’: expanding the signature to include omitted arguments in definition: subset = "missing", target = "missing" Note: in method for ‘mm<-’ with signature ‘object="TilingFeatureSet",subset="ANY",target="ANY",value="array"’: expanding the signature to include omitted arguments in definition: subset = "missing", target = "missing" ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oligo)