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This page was generated on 2025-03-18 11:48 -0400 (Tue, 18 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4537
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4543
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1631/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
puma 3.49.0  (landing page)
Xuejun Liu
Snapshot Date: 2025-03-17 13:40 -0400 (Mon, 17 Mar 2025)
git_url: https://git.bioconductor.org/packages/puma
git_branch: devel
git_last_commit: 1a4a178
git_last_commit_date: 2024-10-29 09:27:54 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

BUILD results for puma on kunpeng2

To the developers/maintainers of the puma package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/puma.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: puma
Version: 3.49.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data puma
StartedAt: 2025-03-18 01:42:37 -0000 (Tue, 18 Mar 2025)
EndedAt: 2025-03-18 01:42:38 -0000 (Tue, 18 Mar 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data puma
###
##############################################################################
##############################################################################


* checking for file ‘puma/DESCRIPTION’ ... OK
* preparing ‘puma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘puma’ ...
** this is package ‘puma’ version ‘3.49.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c PMmultimgmos.c -o PMmultimgmos.o
PMmultimgmos.c: In function ‘freemem_mmgmospm’:
PMmultimgmos.c:138:53: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
  138 |                 if (in_param.parameters[j] != NULL) Free(in_param.parameters[j]);
      |                                                     ^~~~
      |                                                     free
In file included from PMmultimgmos.c:149:
o8comm.h: In function ‘pmcalparameters’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:201: PMmultimgmos.o] Error 1
ERROR: compilation failed for package ‘puma’
* removing ‘/home/biocbuild/tmp/RtmpZKUGgd/Rinst3c935959c85137/puma’
      -----------------------------------
ERROR: package installation failed