Aaron Lun
| Snapshot Date: 2025-02-03 13:40 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/scrapper |
| git_branch: devel |
| git_last_commit: 0f251ee |
| git_last_commit_date: 2025-01-06 13:31:50 -0500 (Mon, 06 Jan 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-04 11:40 -0500 (Tue, 04 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4716 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4478 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4489 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4442 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1898/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scrapper 1.1.12 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the scrapper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scrapper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scrapper |
| Version: 1.1.12 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL scrapper |
| StartedAt: 2025-02-03 15:29:37 -0500 (Mon, 03 Feb 2025) |
| EndedAt: 2025-02-03 15:35:32 -0500 (Mon, 03 Feb 2025) |
| EllapsedTime: 354.5 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL scrapper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘scrapper’ ... ** this is package ‘scrapper’ version ‘1.1.12’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c adt_quality_control.cpp -o adt_quality_control.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c aggregate_across_cells.cpp -o aggregate_across_cells.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c aggregate_across_genes.cpp -o aggregate_across_genes.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c build_snn_graph.cpp -o build_snn_graph.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c center_size_factors.cpp -o center_size_factors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c choose_highly_variable_genes.cpp -o choose_highly_variable_genes.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c choose_pseudo_count.cpp -o choose_pseudo_count.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c cluster_graph.cpp -o cluster_graph.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c cluster_kmeans.cpp -o cluster_kmeans.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c combine_factors.cpp -o combine_factors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c compute_clrm1_factors.cpp -o compute_clrm1_factors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c correct_mnn.cpp -o correct_mnn.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c crispr_quality_control.cpp -o crispr_quality_control.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c fit_variance_trend.cpp -o fit_variance_trend.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c model_gene_variances.cpp -o model_gene_variances.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c normalize_counts.cpp -o normalize_counts.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c rna_quality_control.cpp -o rna_quality_control.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c run_pca.cpp -o run_pca.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c run_tsne.cpp -o run_tsne.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c run_umap.cpp -o run_umap.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c sanitize_size_factors.cpp -o sanitize_size_factors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c scale_by_neighbors.cpp -o scale_by_neighbors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c score_gene_set.cpp -o score_gene_set.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c score_markers.cpp -o score_markers.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c subsample_by_neighbors.cpp -o subsample_by_neighbors.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c summarize_effects.cpp -o summarize_effects.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c test_enrichment.cpp -o test_enrichment.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o scrapper.so RcppExports.o adt_quality_control.o aggregate_across_cells.o aggregate_across_genes.o build_snn_graph.o center_size_factors.o choose_highly_variable_genes.o choose_pseudo_count.o cluster_graph.o cluster_kmeans.o combine_factors.o compute_clrm1_factors.o correct_mnn.o crispr_quality_control.o fit_variance_trend.o model_gene_variances.o normalize_counts.o rna_quality_control.o run_pca.o run_tsne.o run_umap.o sanitize_size_factors.o scale_by_neighbors.o score_gene_set.o score_markers.o subsample_by_neighbors.o summarize_effects.o test_enrichment.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-scrapper/00new/scrapper/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scrapper)