Back to Long Tests report for BioC 3.21

This page was generated on 2025-03-15 23:55 -0400 (Sat, 15 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 196
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4537
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4567
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-03-15 09:55 -0400 (Sat, 15 Mar 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 4a3f8f2
git_last_commit_date: 2024-10-29 11:09:30 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
StartedAt: 2025-03-15 16:01:07 -0400 (Sat, 15 Mar 2025)
EndedAt: 2025-03-15 16:03:01 -0400 (Sat, 15 Mar 2025)
EllapsedTime: 113.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-03-15 16:01:51.560][biodb::testContext]
biodb.INFO [2025-03-15 16:01:51.563][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:01:51.564][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-03-15 16:01:51.565][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:01:51.565][biodb::testContext]
biodb.INFO [2025-03-15 16:01:51.570][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:01:51.571][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-15 16:01:51.577][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:51.578][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-15 16:01:51.578][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.581][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-15 16:01:51.596][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.599][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-15 16:01:51.600][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.603][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-15 16:01:51.603][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-15 16:01:51.604][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-15 16:01:51.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.607][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-15 16:01:51.608][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-15 16:01:51.609][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.612][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-15 16:01:51.613][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-15 16:01:51.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.616][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-15 16:01:51.616][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-15 16:01:51.617][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-15 16:01:51.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.620][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-15 16:01:51.621][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.624][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-15 16:01:51.625][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-15 16:01:51.626][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-15 16:01:51.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.628][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:01:51.629][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-15 16:01:51.630][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-15 16:01:51.631][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-15 16:01:51.631][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-15 16:01:51.632][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-15 16:01:51.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.635][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-15 16:01:51.636][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-15 16:01:51.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.639][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-15 16:01:51.640][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-15 16:01:51.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.642][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-15 16:01:51.643][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-15 16:01:51.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.646][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-15 16:01:51.647][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-15 16:01:51.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.649][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-15 16:01:51.650][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-15 16:01:51.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.653][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:01:51.654][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-15 16:01:51.671][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-15 16:01:51.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.674][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-15 16:01:51.675][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-15 16:01:51.676][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-15 16:01:51.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.680][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-15 16:01:51.712][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.724][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-15 16:01:51.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.725][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:51.726][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.727][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.728][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.728][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.729][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:01:51.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:51.731][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.732][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-15 16:01:51.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:51.733][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:01:51.734][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:01:51.735][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:51.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.737][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:51.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.740][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.740][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:51.742][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:51.742][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.743][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.744][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-15 16:01:51.745][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:01:51.747][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.747][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:51.748][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.749][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.750][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.750][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.751][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:01:51.752][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:51.753][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.754][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-15 16:01:51.755][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:51.755][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.756][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.757][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:51.757][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:51.757][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:51.757][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:01:51.757][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:01:51.758][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:51.758][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.760][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:51.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.762][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.763][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:51.764][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:51.765][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.765][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.766][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-15 16:01:51.767][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.768][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-15 16:01:51.769][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.770][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:51.771][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.771][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.772][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.773][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.774][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:01:51.775][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:51.775][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.776][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-15 16:01:51.777][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:51.778][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.779][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.779][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.780][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:51.781][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:51.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.786][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.786][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:51.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:51.788][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.789][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.789][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-15 16:01:51.791][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.792][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:01:51.793][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.793][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:51.794][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.795][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.796][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.796][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.797][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:01:51.798][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:51.799][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.800][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-15 16:01:51.800][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:51.801][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.802][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:51.803][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.803][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:51.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.805][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.806][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:51.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:51.807][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:51.808][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:51.809][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.810][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:51.810][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:51.811][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:51.812][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:51.815][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:51.815][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.878][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-15 16:01:51.882][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-15 16:01:51.883][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-15 16:01:51.884][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-15 16:01:51.885][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:01:51.886][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-15 16:01:51.887][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-15 16:01:51.888][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-15 16:01:51.890][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-15 16:01:51.891][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-15 16:01:51.892][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:01:51.893][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-15 16:01:51.894][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-15 16:01:51.895][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-15 16:01:51.896][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:01:51.897][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:01:51.898][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-15 16:01:51.899][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-15 16:01:51.900][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:01:51.902][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-15 16:01:51.903][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-15 16:01:51.904][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-15 16:01:51.905][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-15 16:01:51.906][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-15 16:01:51.907][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-15 16:01:51.908][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-15 16:01:51.909][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-15 16:01:51.910][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-15 16:01:51.912][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-15 16:01:51.913][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-15 16:01:51.914][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-15 16:01:51.915][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-15 16:01:51.916][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-15 16:01:51.917][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-15 16:01:51.918][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-15 16:01:51.919][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-15 16:01:51.920][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-15 16:01:51.921][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-15 16:01:51.923][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-15 16:01:51.924][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-15 16:01:51.925][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-15 16:01:51.926][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-15 16:01:51.927][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-15 16:01:51.928][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-15 16:01:51.929][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-15 16:01:51.930][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:01:51.931][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-15 16:01:51.932][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-15 16:01:51.933][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-15 16:01:51.934][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-15 16:01:51.935][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-15 16:01:51.936][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-15 16:01:51.937][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-15 16:01:51.938][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-15 16:01:51.939][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-15 16:01:51.940][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-15 16:01:51.941][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-15 16:01:51.942][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-15 16:01:51.943][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-15 16:01:51.944][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-15 16:01:51.945][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-15 16:01:51.946][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-15 16:01:51.947][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-15 16:01:51.948][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-15 16:01:51.949][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-15 16:01:51.950][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-15 16:01:51.951][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:01:51.952][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:01:51.954][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-15 16:01:51.955][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-15 16:01:51.956][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-15 16:01:51.957][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-15 16:01:51.958][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-15 16:01:51.959][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-15 16:01:51.960][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-15 16:01:51.961][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-15 16:01:51.962][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-15 16:01:51.963][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-15 16:01:51.964][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-15 16:01:51.965][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-15 16:01:51.966][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-15 16:01:51.967][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-15 16:01:51.968][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-15 16:01:51.973][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-15 16:01:51.974][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:01:51.976][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:51.977][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.978][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:51.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:51.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:51.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:51.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:51.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:51.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:51.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:51.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:51.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:51.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:51.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:52.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.068][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-03-15 16:01:52.077][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:01:52.079][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.079][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-03-15 16:01:52.080][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.081][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:52.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.083][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.085][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-03-15 16:01:52.086][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:52.086][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.087][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-03-15 16:01:52.088][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:52.089][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-03-15 16:01:52.089][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-03-15 16:01:52.090][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:52.090][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:52.091][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:01:52.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.094][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:52.094][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.096][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.097][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:01:52.097][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-03-15 16:01:52.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:52.098][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:52.099][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.100][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:52.101][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:01:52.102][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.103][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-03-15 16:01:52.104][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.105][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:52.105][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.107][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.107][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.108][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:01:52.109][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:52.110][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.111][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-03-15 16:01:52.111][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-03-15 16:01:52.112][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-03-15 16:01:52.113][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:52.114][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:52.115][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:01:52.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:52.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.118][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.119][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.120][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:01:52.120][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:01:52.121][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:52.121][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:52.122][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.122][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:52.123][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:01:52.125][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:52.126][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-03-15 16:01:52.148][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.150][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:52.150][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.151][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.152][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.152][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.153][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:01:52.154][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:52.155][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.156][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-03-15 16:01:52.156][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.157][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:01:52.158][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:52.158][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:52.158][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:52.158][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:52.159][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:01:52.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.162][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:52.162][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.163][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.164][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.165][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:01:52.165][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:01:52.165][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:01:52.166][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:52.166][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:52.167][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.168][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:01:52.169][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:01:52.170][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.171][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-03-15 16:01:52.172][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.173][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:52.173][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.174][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.175][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.176][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.176][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:01:52.177][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:52.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.178][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-03-15 16:01:52.179][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:52.180][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-03-15 16:01:52.180][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:01:52.181][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:52.181][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:52.182][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:01:52.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.184][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:52.185][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:52.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:52.186][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:52.187][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:01:52.187][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:01:52.187][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:01:52.188][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:52.188][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:52.189][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:52.190][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:01:52.194][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-03-15 16:01:52.195][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:01:52.196][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:01:52.197][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-03-15 16:01:52.198][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:01:52.199][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-03-15 16:01:52.216][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:01:52.217][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-03-15 16:01:52.221][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:01:52.224][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-03-15 16:01:52.227][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:52.228][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:52.229][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-03-15 16:01:52.230][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:52.230][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:52.231][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-03-15 16:01:52.239][biodb::testThat]
biodb.INFO [2025-03-15 16:01:52.240][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-15 16:01:52.240][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:52.241][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:52.244][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-03-15 16:01:52.245][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:52.248][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:01:52.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:52.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.297][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.307][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:52.398][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-03-15 16:01:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.547][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.548][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.561][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.561][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.569][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.583][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-03-15 16:01:52.608][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:52.609][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:01:52.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:52.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.644][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.649][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:52.684][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-03-15 16:01:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.802][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.805][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.812][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.813][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.825][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.826][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:52.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.833][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:52.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:52.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.835][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:52.842][biodb::testThat]
biodb.INFO [2025-03-15 16:01:52.843][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-15 16:01:52.844][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:52.845][biodb::testThat]
biodb.DEBUG[2025-03-15 16:01:52.847][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-03-15 16:01:52.852][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:01:52.855][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2025-03-15 16:01:52.856][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-03-15 16:01:52.857][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:52.858][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:52.859][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:01:52.859][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:52.860][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:52.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:52.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.873][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-03-15 16:01:52.894][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:52.895][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:52.896][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-03-15 16:01:54.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-03-15 16:01:55.596][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:55.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-03-15 16:01:55.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-03-15 16:01:55.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:55.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:55.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:55.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:55.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:55.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:55.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:55.645][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-03-15 16:01:55.658][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:55.659][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:55.670][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-03-15 16:01:56.924][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-03-15 16:01:57.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:57.991][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-03-15 16:01:57.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-03-15 16:01:57.997][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-03-15 16:01:57.999][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:58.000][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:01:58.001][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:01:58.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:58.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:58.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:58.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:58.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:58.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:58.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.036][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:58.036][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:58.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:58.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:58.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:58.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:58.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:58.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:58.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.086][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:58.087][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.089][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:01:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:01:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:58.141][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-03-15 16:01:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:58.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:58.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:58.173][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.174][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-15 16:01:58.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.175][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.181][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.182][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-15 16:01:58.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.184][biodb::testThat]
biodb.WARN [2025-03-15 16:01:58.198][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-03-15 16:01:58.218][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-03-15 16:01:58.227][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.228][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-15 16:01:58.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.229][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:01:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:58.309][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.309][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-15 16:01:58.310][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.311][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.319][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.320][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-15 16:01:58.321][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.322][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.329][biodb::testThat]
biodb.INFO [2025-03-15 16:01:58.330][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-15 16:01:58.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:58.332][biodb::testThat]
biodb.DEBUG[2025-03-15 16:01:58.335][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-03-15 16:01:59.416][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-03-15 16:02:00.656][biodb::testThat]
biodb.INFO [2025-03-15 16:02:00.657][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:00.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:00.659][biodb::testThat]
biodb.INFO [2025-03-15 16:02:00.665][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-15 16:02:00.666][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-03-15 16:02:00.666][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-03-15 16:02:00.667][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-15 16:02:00.668][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:00.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:00.669][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.671][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-15 16:02:00.679][biodb::testContext]
biodb.INFO [2025-03-15 16:02:00.680][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:00.681][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-03-15 16:02:00.681][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:00.682][biodb::testContext]
biodb.INFO [2025-03-15 16:02:00.684][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:00.685][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:00.688][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:00.689][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-15 16:02:00.690][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.693][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-15 16:02:00.693][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.696][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-15 16:02:00.697][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.700][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-15 16:02:00.705][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-15 16:02:00.708][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-15 16:02:00.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.711][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-15 16:02:00.712][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-15 16:02:00.712][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.715][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-15 16:02:00.716][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-15 16:02:00.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.718][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-15 16:02:00.719][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-15 16:02:00.720][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-15 16:02:00.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.723][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-15 16:02:00.723][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.726][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-15 16:02:00.727][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-15 16:02:00.728][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-15 16:02:00.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.730][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:00.731][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-15 16:02:00.732][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-15 16:02:00.733][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-15 16:02:00.733][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-15 16:02:00.734][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-15 16:02:00.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.737][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-15 16:02:00.738][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-15 16:02:00.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.740][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-15 16:02:00.741][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-15 16:02:00.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.744][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-15 16:02:00.745][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-15 16:02:00.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.748][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-15 16:02:00.749][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-15 16:02:00.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.752][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-15 16:02:00.753][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-15 16:02:00.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.756][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:00.756][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-15 16:02:00.773][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-15 16:02:00.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.776][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-15 16:02:00.777][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-15 16:02:00.778][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-15 16:02:00.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.781][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-15 16:02:00.783][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.783][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-15 16:02:00.784][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.785][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:00.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.786][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.787][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.788][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.789][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:00.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:00.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.791][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-15 16:02:00.792][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:00.793][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:00.794][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:00.795][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:00.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.797][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:00.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.800][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:00.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:00.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.807][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.808][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-15 16:02:00.810][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.810][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:00.811][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.812][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:00.813][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.813][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.815][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.815][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:00.816][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:00.817][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.818][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-15 16:02:00.819][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:00.819][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.820][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.821][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:00.821][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:00.821][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:00.821][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:00.821][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:00.822][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:00.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.824][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:00.824][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.826][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.826][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.827][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:00.828][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:00.828][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.829][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.830][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-15 16:02:00.832][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.832][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-15 16:02:00.833][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:00.835][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.836][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.837][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.837][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.838][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:00.839][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:00.840][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.841][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-15 16:02:00.841][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:00.842][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.843][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.844][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.844][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:00.845][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.847][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:00.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.848][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.849][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.850][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.851][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:00.851][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:00.852][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.853][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.854][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-15 16:02:00.855][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.856][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:00.856][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.857][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:00.858][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.859][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.860][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.861][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.861][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:00.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:00.863][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.864][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-15 16:02:00.865][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:00.865][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.866][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:00.867][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.868][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:00.869][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.869][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.870][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:00.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:00.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:00.872][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:00.873][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.874][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:00.875][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:00.875][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:00.876][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:00.877][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:00.878][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:00.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.941][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-15 16:02:00.942][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-15 16:02:00.943][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-15 16:02:00.945][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-15 16:02:00.946][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:02:00.947][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-15 16:02:00.948][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:00.949][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:00.950][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-15 16:02:00.951][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-15 16:02:00.952][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:02:00.953][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-15 16:02:00.954][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:00.955][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:00.957][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:00.958][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:00.959][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-15 16:02:00.960][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-15 16:02:00.961][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:02:00.962][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-15 16:02:00.963][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-15 16:02:00.964][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-15 16:02:00.965][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-15 16:02:00.966][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-15 16:02:00.968][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-15 16:02:00.969][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-15 16:02:00.974][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-15 16:02:00.975][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-15 16:02:00.976][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-15 16:02:00.977][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-15 16:02:00.978][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-15 16:02:00.979][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-15 16:02:00.980][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-15 16:02:00.981][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-15 16:02:00.982][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-15 16:02:00.983][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-15 16:02:00.984][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-15 16:02:00.985][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-15 16:02:00.986][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-15 16:02:00.987][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-15 16:02:00.988][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-15 16:02:00.989][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-15 16:02:00.990][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-15 16:02:00.991][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-15 16:02:00.992][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-15 16:02:00.993][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:00.994][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-15 16:02:00.995][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-15 16:02:00.996][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-15 16:02:00.997][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-15 16:02:00.999][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-15 16:02:01.000][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-15 16:02:01.001][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-15 16:02:01.002][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-15 16:02:01.003][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-15 16:02:01.004][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-15 16:02:01.005][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-15 16:02:01.006][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-15 16:02:01.007][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-15 16:02:01.008][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-15 16:02:01.009][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-15 16:02:01.010][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-15 16:02:01.011][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-15 16:02:01.012][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-15 16:02:01.013][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-15 16:02:01.015][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-15 16:02:01.016][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:02:01.017][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:02:01.018][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-15 16:02:01.019][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-15 16:02:01.020][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-15 16:02:01.021][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-15 16:02:01.022][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-15 16:02:01.023][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-15 16:02:01.024][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-15 16:02:01.025][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-15 16:02:01.026][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-15 16:02:01.027][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-15 16:02:01.028][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-15 16:02:01.029][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-15 16:02:01.030][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-15 16:02:01.031][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-15 16:02:01.032][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-15 16:02:01.033][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-15 16:02:01.035][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:01.036][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:01.036][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.038][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:01.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.125][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:01.127][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:02:01.128][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.129][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-03-15 16:02:01.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.131][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:01.132][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.136][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.137][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.138][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.139][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-03-15 16:02:01.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:01.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.141][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-03-15 16:02:01.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:01.143][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-03-15 16:02:01.143][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-03-15 16:02:01.143][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:01.144][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:01.145][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:01.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.147][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:01.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.149][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.150][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:01.150][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-03-15 16:02:01.151][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:01.152][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:01.152][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.153][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:01.154][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:02:01.156][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.157][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-03-15 16:02:01.157][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.158][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:01.159][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.160][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.161][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.162][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:01.163][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:01.164][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.164][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-03-15 16:02:01.165][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-03-15 16:02:01.166][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-03-15 16:02:01.167][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:01.168][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:01.168][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:01.169][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.170][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.171][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:01.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.173][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.174][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:01.174][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:01.175][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:01.175][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:01.176][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.177][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:01.178][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:02:01.179][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:01.180][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-03-15 16:02:01.181][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:01.182][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.183][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.184][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.185][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.186][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:01.186][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:01.187][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.188][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.189][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:01.190][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:01.191][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:01.191][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:01.191][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:01.192][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:01.193][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.194][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:01.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.196][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.197][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:01.197][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:01.197][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:01.198][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:01.199][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:01.199][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.200][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:01.201][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:02:01.203][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.204][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-03-15 16:02:01.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:01.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.206][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.207][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.208][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.209][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:01.210][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:01.210][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.211][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-03-15 16:02:01.212][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:01.213][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-03-15 16:02:01.213][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:01.213][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:01.214][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:01.215][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:01.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:01.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:01.222][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:01.223][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:01.224][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:01.224][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:01.224][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:01.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:01.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:01.226][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:01.227][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:01.228][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-03-15 16:02:01.229][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:01.230][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:01.231][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-03-15 16:02:01.232][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:01.234][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-03-15 16:02:01.240][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:02:01.240][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-03-15 16:02:01.241][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:02:01.243][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-03-15 16:02:01.244][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.244][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.245][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-03-15 16:02:01.247][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.247][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.302][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-03-15 16:02:01.305][biodb::testThat]
biodb.INFO [2025-03-15 16:02:01.306][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-15 16:02:01.307][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:01.307][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:01.312][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-03-15 16:02:01.313][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:01.315][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:01.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:01.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.341][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.342][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.348][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.349][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.355][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.356][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.362][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.369][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.370][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:01.420][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-03-15 16:02:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:01.438][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:01.494][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:02:01.495][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-03-15 16:02:01.495][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:02:01.507][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-03-15 16:02:01.508][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.509][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-03-15 16:02:01.519][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.520][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.521][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-03-15 16:02:01.522][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.523][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-03-15 16:02:01.523][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.524][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:02:01.534][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-03-15 16:02:01.535][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-03-15 16:02:01.536][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:01.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-03-15 16:02:01.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:01.541][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2025-03-15 16:02:01.542][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:01.543][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:01.544][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:01.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.572][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:01.573][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.575][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:01.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:01.609][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-03-15 16:02:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.724][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.725][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.747][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.748][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.769][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.770][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.792][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.793][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.812][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.818][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.819][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.840][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.853][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:01.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.863][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:01.863][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.865][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.876][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.876][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:01.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.887][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.887][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.893][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.899][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.899][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.905][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.906][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.912][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:01.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.918][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.919][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:01.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.925][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.926][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.934][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-03-15 16:02:01.935][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:01.936][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:01.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:01.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.961][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.962][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.968][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.969][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.980][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.981][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.986][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.992][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.993][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:02.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:02.035][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-03-15 16:02:02.037][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:02.057][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:02.057][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-03-15 16:02:02.089][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:02.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-03-15 16:02:02.101][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:02.102][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:02.103][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:02.104][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:02.108][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:02.109][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:02.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:02.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:02.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:02.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:02.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:02.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:02.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:02.120][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-03-15 16:02:02.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:02.123][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:02.124][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-03-15 16:02:03.229][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-03-15 16:02:04.313][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:04.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-03-15 16:02:04.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-03-15 16:02:04.320][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-03-15 16:02:04.321][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:04.322][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:04.323][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:04.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.346][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.347][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.389][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-03-15 16:02:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:04.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:04.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.508][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.512][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:04.512][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.515][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:04.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.524][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:04.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.532][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.538][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:04.538][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.553][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.559][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.559][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.580][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.581][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.606][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.607][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.619][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:04.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.628][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:04.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.631][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.632][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:04.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.651][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.652][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.654][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.654][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.665][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.666][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.671][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.672][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.688][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.689][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.691][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.695][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.696][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.701][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:04.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.707][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.708][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.713][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.714][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.724][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-03-15 16:02:04.725][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:04.726][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:04.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:04.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.751][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.757][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.758][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:04.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:04.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.765][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:04.765][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.769][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.772][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:04.773][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:04.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.779][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:04.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.791][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.792][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.834][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-03-15 16:02:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.852][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:04.853][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-03-15 16:02:04.853][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:04.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-03-15 16:02:04.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:04.857][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-03-15 16:02:04.858][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:04.859][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:04.859][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:04.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.884][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.885][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.920][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-03-15 16:02:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:04.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:04.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.004][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.161][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:05.161][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.182][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:05.182][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.184][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.194][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.203][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.204][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.224][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.225][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.247][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.247][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.250][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.270][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:05.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:05.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.294][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:05.295][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.308][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.309][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.315][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.316][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.329][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.330][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.336][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.337][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.344][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:05.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.351][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.352][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.358][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.359][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.369][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-03-15 16:02:05.370][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:05.371][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:05.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:05.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:05.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:05.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:05.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:05.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:05.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:05.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.394][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.398][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.399][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.406][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:05.407][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.413][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:05.414][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.420][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:05.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.428][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.429][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:05.479][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-03-15 16:02:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:05.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:05.495][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:05.496][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-03-15 16:02:05.496][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:05.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-03-15 16:02:05.498][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:05.499][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:05.500][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:05.501][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:05.501][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:05.502][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:05.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:05.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:05.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:05.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:05.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:05.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:05.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:05.520][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-03-15 16:02:05.522][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:05.523][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:05.523][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-03-15 16:02:06.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-03-15 16:02:10.088][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:10.090][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-03-15 16:02:10.093][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-03-15 16:02:10.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-03-15 16:02:10.097][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:10.098][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:10.099][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:10.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.124][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:10.125][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.127][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:10.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:10.162][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-03-15 16:02:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.245][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.264][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:10.265][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.277][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.283][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.287][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:10.287][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.308][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.309][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.338][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.339][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.359][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.359][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:10.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:10.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.379][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:10.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.392][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.395][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.400][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:10.401][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.412][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.413][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.418][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.419][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.424][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.430][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.431][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.436][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.437][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.442][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:10.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.449][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.449][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.455][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.456][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.457][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.468][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-03-15 16:02:10.470][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:10.470][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:10.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:10.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.513][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.514][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.520][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:10.521][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.527][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:10.528][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.530][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.535][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:10.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.542][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.543][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.549][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:10.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:10.589][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-03-15 16:02:10.591][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.594][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:10.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:10.605][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:10.606][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-03-15 16:02:10.607][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:10.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-03-15 16:02:10.609][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:10.610][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:10.611][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:10.612][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:10.612][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:10.613][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:10.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:10.624][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-03-15 16:02:10.626][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:10.627][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:10.628][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-03-15 16:02:12.111][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-03-15 16:02:13.226][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:13.228][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-03-15 16:02:13.231][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-03-15 16:02:13.233][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-03-15 16:02:13.234][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:13.235][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:13.236][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:13.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.276][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:13.277][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.280][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:13.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.311][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-03-15 16:02:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:13.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.388][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:13.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.403][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.409][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:13.410][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.431][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:13.431][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.449][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.452][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.453][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.474][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.475][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.495][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.495][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.507][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:13.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.516][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:13.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.518][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.539][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:13.540][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.557][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.558][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.565][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.566][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.580][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.581][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.587][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.588][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.596][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:13.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.606][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.607][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.614][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.615][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.625][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-03-15 16:02:13.626][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:13.627][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:13.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.655][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.656][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.663][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:13.664][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.666][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.671][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:13.672][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.681][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:13.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:13.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.689][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.691][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:13.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:13.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.740][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-03-15 16:02:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:13.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.756][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:13.757][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-03-15 16:02:13.757][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:13.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-03-15 16:02:13.760][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:13.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:13.762][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:13.762][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:13.763][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:13.764][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:13.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:13.775][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-03-15 16:02:13.777][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:13.777][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:13.779][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-03-15 16:02:14.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-03-15 16:02:16.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:16.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-03-15 16:02:16.015][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-03-15 16:02:16.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-03-15 16:02:16.019][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:16.020][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:16.021][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:16.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:16.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:16.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:16.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:16.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:16.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:16.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.050][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:16.050][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:16.085][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-03-15 16:02:16.086][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:16.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:16.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:16.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:16.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:16.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:16.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.193][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:16.193][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:16.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:16.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.209][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.215][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:16.216][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.227][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.231][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.234][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.237][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.238][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.240][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.240][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.259][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.260][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.278][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.281][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.281][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.293][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.302][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:16.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.304][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.305][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.315][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:16.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.324][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:16.325][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.337][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.338][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.343][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.344][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.356][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.357][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.362][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.363][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:16.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.375][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.376][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.382][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.382][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.390][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-03-15 16:02:16.391][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:16.392][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:16.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:16.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:16.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:16.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:16.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:16.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:16.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:16.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.414][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.415][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.420][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:16.421][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.432][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:16.435][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.440][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:16.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.446][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.447][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.450][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:16.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:16.486][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-03-15 16:02:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:16.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:16.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:16.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:16.503][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-03-15 16:02:16.503][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-03-15 16:02:16.504][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:16.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-03-15 16:02:16.506][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:16.507][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:16.508][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:16.509][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:16.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:16.510][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:16.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:16.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:16.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:16.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:16.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:16.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:16.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:16.521][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-03-15 16:02:16.523][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:16.524][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:16.525][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-03-15 16:02:17.617][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-03-15 16:02:18.715][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:18.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-03-15 16:02:18.719][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-03-15 16:02:18.721][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-03-15 16:02:18.722][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:18.723][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:18.724][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-03-15 16:02:18.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:18.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:18.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:18.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:18.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:18.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:18.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.748][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:18.749][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:18.783][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-03-15 16:02:18.784][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.787][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:18.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:18.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.874][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.877][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.883][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:18.884][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.886][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:18.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:18.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.896][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:18.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.913][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:18.914][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:18.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.931][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.934][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.934][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.955][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.956][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:18.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:18.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.976][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:18.977][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:18.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:18.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:18.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:19.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.018][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:19.019][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.021][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-03-15 16:02:19.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.031][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.032][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.037][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.038][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.049][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.050][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.055][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.056][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.061][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:19.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.068][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.068][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.074][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.075][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.076][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-03-15 16:02:19.081][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:19.082][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:19.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.093][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.095][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.099][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.100][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.101][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.105][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.106][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.108][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.109][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.109][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.112][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.115][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.118][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.119][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.151][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-03-15 16:02:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:19.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:19.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:19.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.257][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.258][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.260][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.279][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.280][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.299][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.300][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.301][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.306][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.306][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.308][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:19.315][biodb::testThat]
biodb.INFO [2025-03-15 16:02:19.316][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-15 16:02:19.317][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:19.318][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:19.319][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-03-15 16:02:19.320][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-03-15 16:02:19.322][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-03-15 16:02:19.323][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-03-15 16:02:19.357][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-03-15 16:02:19.358][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:19.359][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-03-15 16:02:19.360][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-03-15 16:02:19.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.388][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.388][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.395][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.395][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.398][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.402][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.402][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.408][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.415][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.416][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.420][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.477][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.478][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.483][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.484][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.490][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.491][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.497][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.499][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.504][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.505][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.579][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.580][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.586][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.587][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.593][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.594][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.600][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.607][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.608][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.612][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.670][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.677][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.677][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.684][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.684][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.686][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.691][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.698][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.698][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.766][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.773][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.774][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.777][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.780][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.781][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.787][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.788][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.794][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.801][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.802][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.856][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.862][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.863][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.868][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.869][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.874][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.875][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.881][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.884][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.887][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.888][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.891][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.957][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.958][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:19.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:19.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.963][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.964][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.970][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.970][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:19.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.976][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.982][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.983][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:20.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:20.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:20.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:20.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:20.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:20.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:20.022][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.028][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:20.029][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:20.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-15 16:02:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-15 16:02:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.034][ef$get] Asked field names are: location.
biodb.TRACE[2025-03-15 16:02:20.035][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-03-15 16:02:20.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.037][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:20.038][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:20.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-03-15 16:02:20.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-03-15 16:02:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.043][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-03-15 16:02:20.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.046][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:20.047][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-03-15 16:02:20.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-03-15 16:02:20.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.143][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-03-15 16:02:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:20.253][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.254][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-15 16:02:20.255][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.256][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:20.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.260][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.261][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-03-15 16:02:20.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.283][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-03-15 16:02:20.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-03-15 16:02:20.291][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:20.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-03-15 16:02:20.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:20.294][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2025-03-15 16:02:20.296][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-03-15 16:02:20.309][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.310][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-15 16:02:20.311][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.312][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-03-15 16:02:20.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:20.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-03-15 16:02:20.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:20.358][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-03-15 16:02:20.373][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.374][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-15 16:02:20.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.375][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:20.384][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:20.400][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-03-15 16:02:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:20.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:20.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:20.446][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.447][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-15 16:02:20.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.449][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.458][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.458][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-15 16:02:20.459][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.460][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.467][biodb::testThat]
biodb.INFO [2025-03-15 16:02:20.467][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:20.468][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:20.469][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:20.471][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-03-15 16:02:23.064][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-03-15 16:02:26.168][biodb::testThat]
biodb.INFO [2025-03-15 16:02:26.169][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:26.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:26.171][biodb::testThat]
biodb.INFO [2025-03-15 16:02:26.177][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-15 16:02:26.178][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-03-15 16:02:26.179][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-03-15 16:02:26.179][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-03-15 16:02:26.185][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-03-15 16:02:26.186][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-15 16:02:26.186][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.188][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.189][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-15 16:02:26.193][biodb::testContext]
biodb.INFO [2025-03-15 16:02:26.194][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:26.195][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-03-15 16:02:26.195][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:26.196][biodb::testContext]
biodb.INFO [2025-03-15 16:02:26.198][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:26.206][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:26.212][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:26.213][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-15 16:02:26.214][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.217][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-15 16:02:26.218][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.221][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-15 16:02:26.222][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.227][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-15 16:02:26.230][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-15 16:02:26.231][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-15 16:02:26.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.234][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-15 16:02:26.234][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-15 16:02:26.235][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.238][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-15 16:02:26.239][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-15 16:02:26.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.242][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-15 16:02:26.242][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-15 16:02:26.243][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-15 16:02:26.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.246][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-15 16:02:26.247][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.250][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-15 16:02:26.250][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-15 16:02:26.251][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-15 16:02:26.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.254][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:26.255][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-15 16:02:26.255][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-15 16:02:26.256][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-15 16:02:26.257][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-15 16:02:26.258][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-15 16:02:26.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.261][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-15 16:02:26.261][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-15 16:02:26.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.264][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-15 16:02:26.265][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-15 16:02:26.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.268][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-15 16:02:26.269][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-15 16:02:26.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.272][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-15 16:02:26.275][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-15 16:02:26.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.278][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-15 16:02:26.279][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-15 16:02:26.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.282][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:26.283][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-15 16:02:26.299][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-15 16:02:26.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.302][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-15 16:02:26.303][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-15 16:02:26.304][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-15 16:02:26.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.307][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-15 16:02:26.309][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.309][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-15 16:02:26.310][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.311][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.312][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.313][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.313][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.315][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:26.316][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.317][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.317][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-15 16:02:26.318][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.319][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.320][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:26.321][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:26.322][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.323][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.324][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.325][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.326][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.327][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.329][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.330][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.331][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-15 16:02:26.332][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.333][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:26.334][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.334][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.335][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.336][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.336][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.337][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.338][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:26.339][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.339][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.340][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-15 16:02:26.341][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.344][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.345][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:26.346][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:26.346][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:26.346][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:26.346][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:26.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:26.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.349][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.352][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.352][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.354][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.355][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.358][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-15 16:02:26.363][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.363][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-15 16:02:26.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.365][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.366][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.367][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.367][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.368][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.369][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:26.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.371][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.371][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-15 16:02:26.372][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.373][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.374][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.375][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.376][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:26.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.378][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.379][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.380][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.381][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.383][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.384][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.385][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-15 16:02:26.386][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.387][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:26.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.389][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.390][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.391][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.392][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.393][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:26.394][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.394][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.395][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-15 16:02:26.396][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.397][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.398][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.398][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.399][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:26.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.401][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.402][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.403][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.404][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.404][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.405][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.406][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.407][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.407][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.408][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:26.409][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.480][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-15 16:02:26.481][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-15 16:02:26.482][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-15 16:02:26.483][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-15 16:02:26.485][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:02:26.486][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-15 16:02:26.487][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:26.488][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:26.489][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-15 16:02:26.493][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-15 16:02:26.494][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:02:26.495][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-15 16:02:26.496][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:26.497][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:26.498][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:26.499][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:26.500][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-15 16:02:26.501][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-15 16:02:26.502][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:02:26.503][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-15 16:02:26.505][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-15 16:02:26.506][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-15 16:02:26.507][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-15 16:02:26.508][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-15 16:02:26.510][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-15 16:02:26.513][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-15 16:02:26.514][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-15 16:02:26.515][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-15 16:02:26.516][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-15 16:02:26.517][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-15 16:02:26.518][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-15 16:02:26.519][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-15 16:02:26.520][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-15 16:02:26.521][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-15 16:02:26.522][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-15 16:02:26.523][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-15 16:02:26.524][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-15 16:02:26.525][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-15 16:02:26.526][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-15 16:02:26.531][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-15 16:02:26.532][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-15 16:02:26.533][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-15 16:02:26.534][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-15 16:02:26.535][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-15 16:02:26.536][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-15 16:02:26.537][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:26.538][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-15 16:02:26.539][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-15 16:02:26.540][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-15 16:02:26.541][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-15 16:02:26.542][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-15 16:02:26.543][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-15 16:02:26.544][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-15 16:02:26.545][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-15 16:02:26.546][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-15 16:02:26.547][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-15 16:02:26.548][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-15 16:02:26.549][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-15 16:02:26.550][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-15 16:02:26.551][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-15 16:02:26.552][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-15 16:02:26.553][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-15 16:02:26.554][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-15 16:02:26.555][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-15 16:02:26.556][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-15 16:02:26.557][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-15 16:02:26.558][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:02:26.559][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:02:26.560][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-15 16:02:26.561][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-15 16:02:26.562][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-15 16:02:26.563][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-15 16:02:26.564][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-15 16:02:26.565][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-15 16:02:26.566][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-15 16:02:26.567][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-15 16:02:26.567][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-15 16:02:26.568][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-15 16:02:26.569][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-15 16:02:26.570][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-15 16:02:26.577][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-15 16:02:26.578][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-15 16:02:26.579][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-15 16:02:26.580][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-15 16:02:26.582][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:26.583][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:26.583][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.585][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:26.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.681][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:26.685][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:02:26.687][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.688][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-03-15 16:02:26.688][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.692][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.692][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.693][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-03-15 16:02:26.694][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.695][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.695][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-03-15 16:02:26.696][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.697][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-03-15 16:02:26.697][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-03-15 16:02:26.698][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.699][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.700][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:26.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.701][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.702][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.703][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.704][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.705][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.705][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:26.705][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-03-15 16:02:26.706][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.707][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.708][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.709][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.710][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:02:26.711][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.712][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-03-15 16:02:26.713][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.714][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.715][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.716][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.717][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.718][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:26.718][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.719][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.720][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-03-15 16:02:26.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-03-15 16:02:26.722][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.723][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:26.724][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:26.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.726][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.728][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.728][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.729][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:26.729][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:26.730][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.731][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.731][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.732][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.733][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:02:26.734][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.735][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-03-15 16:02:26.736][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.738][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.739][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.739][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.740][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.741][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:26.742][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.744][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-03-15 16:02:26.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.746][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:26.751][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.752][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:26.752][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:26.752][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:26.752][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:26.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.755][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.756][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.757][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.758][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:26.758][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:26.758][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:26.759][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.759][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.760][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.761][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:26.762][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:02:26.763][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.766][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-03-15 16:02:26.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.771][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:26.772][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.773][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.775][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:26.775][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:26.776][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.777][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-03-15 16:02:26.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:26.779][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-03-15 16:02:26.779][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:26.780][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:26.780][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:26.781][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:26.782][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:26.784][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:26.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:26.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:26.786][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:26.786][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:26.786][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:26.787][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:26.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:26.788][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:26.789][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:26.790][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-03-15 16:02:26.791][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:26.792][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:26.794][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-03-15 16:02:26.795][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:26.796][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-03-15 16:02:26.802][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:02:26.803][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-03-15 16:02:26.804][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:02:26.805][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-03-15 16:02:26.806][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:26.807][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:26.808][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-03-15 16:02:26.809][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:26.810][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:26.811][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:26.815][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-03-15 16:02:26.818][biodb::testThat]
biodb.INFO [2025-03-15 16:02:26.819][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-15 16:02:26.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:26.820][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:26.823][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-03-15 16:02:26.824][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:26.826][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:26.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:26.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:26.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.851][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.853][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.863][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.864][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.870][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.870][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.876][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.877][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.882][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.883][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.888][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:26.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.891][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:26.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:26.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:26.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:26.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:26.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.913][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:26.914][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:26.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.920][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:26.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.932][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:26.933][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:26.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.939][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:26.940][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:26.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:27.038][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-03-15 16:02:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.159][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:27.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.181][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:27.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.223][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.226][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.227][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.253][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.254][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.281][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.303][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.304][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.327][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.327][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.349][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.372][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.373][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.395][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.395][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.500][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.501][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.507][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.508][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.509][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.516][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.520][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.521][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.526][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.527][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.557][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.558][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.581][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.588][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.589][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.595][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.596][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.602][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-03-15 16:02:27.603][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:27.604][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:27.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:27.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:27.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:27.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:27.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:27.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:27.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:27.616][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.623][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.630][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.630][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.636][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.643][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.649][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.650][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.656][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:27.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.663][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.683][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.683][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.689][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:27.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.691][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.696][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.702][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.703][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:27.801][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-03-15 16:02:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:27.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:27.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.945][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.968][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.990][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.991][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:27.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.013][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.014][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.015][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.036][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.037][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.118][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.119][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.140][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.141][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.164][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.212][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.213][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.261][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.262][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.268][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.269][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.275][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.282][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.288][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.290][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.296][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:28.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:28.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.316][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:28.317][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.351][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.354][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.362][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.363][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.365][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:28.373][biodb::testThat]
biodb.INFO [2025-03-15 16:02:28.374][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-15 16:02:28.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:28.375][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:28.377][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-03-15 16:02:28.379][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:02:28.381][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-03-15 16:02:28.383][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-03-15 16:02:28.386][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-03-15 16:02:28.387][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:28.388][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:02:28.389][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:28.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:28.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:28.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:28.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:28.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:28.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:28.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:28.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.406][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.412][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.418][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.418][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.423][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.424][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.430][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.430][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.436][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.437][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.442][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:28.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:28.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:28.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.464][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.468][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:28.469][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:28.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.475][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:28.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.477][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.484][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.488][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.489][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:28.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:28.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:28.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:28.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:28.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:28.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:28.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:28.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.594][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.595][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.601][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.601][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.615][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.620][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.627][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:28.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.630][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:28.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.653][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:28.653][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:28.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.659][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:28.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.666][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.667][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.669][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:28.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.673][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.674][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:28.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:28.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.713][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:28.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:28.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.779][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-03-15 16:02:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:28.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:28.816][biodb::testThat]
biodb.INFO [2025-03-15 16:02:28.817][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-15 16:02:28.817][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:28.818][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:28.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.823][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.824][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-03-15 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.848][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-03-15 16:02:28.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-03-15 16:02:28.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:28.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-03-15 16:02:28.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:28.859][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-03-15 16:02:28.860][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-03-15 16:02:28.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.874][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:28.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.878][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:28.882][biodb::testThat]
biodb.INFO [2025-03-15 16:02:28.882][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-15 16:02:28.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:28.884][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:28.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-03-15 16:02:28.933][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:28.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-03-15 16:02:28.937][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:28.938][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-03-15 16:02:28.963][biodb::testThat]
biodb.INFO [2025-03-15 16:02:28.964][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-15 16:02:28.965][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:28.966][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:29.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:29.031][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.031][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-15 16:02:29.032][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:29.033][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.039][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.040][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-15 16:02:29.041][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:29.042][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.048][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.049][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:29.050][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:29.051][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:29.053][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-03-15 16:02:29.293][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-03-15 16:02:29.446][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.447][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:29.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:29.449][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:29.521][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-03-15 16:02:29.593][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.599][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:29.600][biodb::testThat]
biodb.INFO [2025-03-15 16:02:29.601][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-03-15 16:02:29.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:29.602][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:29.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:29.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-03-15 16:02:29.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:29.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-03-15 16:02:29.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:29.700][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-03-15 16:02:29.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-03-15 16:02:29.758][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:29.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-03-15 16:02:29.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:29.761][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-03-15 16:02:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:29.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:29.814][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:29.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:29.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:29.819][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:29.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:29.836][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:29.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-03-15 16:02:29.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:29.841][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-03-15 16:02:30.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:30.054][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-03-15 16:02:30.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.061][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-03-15 16:02:30.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:30.084][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-03-15 16:02:30.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.091][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-03-15 16:02:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:30.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-03-15 16:02:30.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.133][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-03-15 16:02:30.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:30.149][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-03-15 16:02:30.151][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.153][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-03-15 16:02:30.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:30.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-03-15 16:02:30.172][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.174][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-03-15 16:02:30.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-03-15 16:02:30.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-03-15 16:02:30.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-03-15 16:02:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:30.229][biodb::testThat]
biodb.INFO [2025-03-15 16:02:30.230][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-15 16:02:30.231][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:30.231][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:30.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:30.291][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:30.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.294][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:30.295][private$loadEntries] Creating entries from ids [3]: "172859178, 172856808, 172856150".
biodb.DEBUG[2025-03-15 16:02:30.296][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:30.297][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172859178, 172856808, 172856150".
biodb.TRACE[2025-03-15 16:02:30.298][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-03-15 16:02:30.304][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172859178.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172856808.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172856150.xml".
biodb.DEBUG[2025-03-15 16:02:30.305][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:30.306][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:30.307][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:30.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.324][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.325][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.330][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.331][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.336][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.337][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.343][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.349][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.349][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.355][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.380][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.381][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.386][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.388][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.393][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.393][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.399][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.400][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.405][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:30.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.493][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.499][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.500][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.506][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.506][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.518][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.523][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.524][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.529][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.531][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.543][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.553][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.554][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.559][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.565][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.566][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.572][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.665][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.690][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.690][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.696][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.721][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.721][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.727][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:30.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.733][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.734][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.739][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.740][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:30.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:30.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.846][self$createEntryFromContent] Accession numbers: 172859178, 172856808, 172856150.
biodb.DEBUG[2025-03-15 16:02:30.847][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:30.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.865][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.875][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.879][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-03-15 16:02:30.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.911][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.913][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.920][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856808].
biodb.DEBUG[2025-03-15 16:02:30.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.952][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.955][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.962][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:30.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.966][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856150].
biodb.DEBUG[2025-03-15 16:02:30.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:30.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:30.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:30.994][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:30.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:30.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:30.998][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:31.216][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:31.217][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:31.270][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:31.272][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:31.354][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:31.356][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-03-15 16:02:31.359][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-03-15 16:02:31.361][private$loadEntries] Creating entries from ids [3]: "172862279, 172849147, 172848182".
biodb.DEBUG[2025-03-15 16:02:31.362][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:31.363][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172862279, 172849147, 172848182".
biodb.TRACE[2025-03-15 16:02:31.364][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:31.365][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:31.366][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:31.367][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:31.368][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:31.368][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:31.369][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-03-15 16:02:31.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862279,172849147,172848182/XML".
biodb.DEBUG[2025-03-15 16:02:31.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:31.373][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:31.374][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862279,172849147,172848182/XML".
biodb.TRACE[2025-03-15 16:02:31.493][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862279,172849147,172848182/XML).
biodb.TRACE[2025-03-15 16:02:31.722][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172862279.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172849147.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172848182.xml"
biodb.DEBUG[2025-03-15 16:02:31.724][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:31.725][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:31.726][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:31.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:31.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:31.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:31.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:31.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:31.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:31.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:31.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.745][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.751][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.752][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.764][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.765][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.770][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.771][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.776][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:31.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.779][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:31.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:31.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:31.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:31.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.801][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:31.802][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.804][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:31.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.810][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.811][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.817][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.819][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:31.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:31.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:31.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:31.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:31.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:31.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:31.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:31.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:31.902][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:31.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.909][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.910][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.916][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.917][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:31.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.924][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.931][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.932][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.939][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.945][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:31.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:31.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:31.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:31.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:31.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.980][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:31.981][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:31.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.984][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:31.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:31.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:31.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.991][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.998][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:31.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.032][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:32.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.090][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.091][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.096][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.097][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.103][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.104][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.110][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.122][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.147][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.147][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.150][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.156][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.157][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.163][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.163][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:32.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:32.271][self$createEntryFromContent] Accession numbers: 172862279, 172849147, 172848182.
biodb.DEBUG[2025-03-15 16:02:32.288][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:32.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.319][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.320][private$selectFields]
biodb.TRACE[2025-03-15 16:02:32.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:32.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:32.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.330][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.333][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:32.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.360][private$selectFields]
biodb.TRACE[2025-03-15 16:02:32.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:32.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:32.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-03-15 16:02:32.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.401][private$selectFields]
biodb.TRACE[2025-03-15 16:02:32.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:32.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:32.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.411][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:32.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.415][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172848182].
biodb.DEBUG[2025-03-15 16:02:32.426][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:32.427][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:32.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:32.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:32.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:32.523][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:32.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:32.524][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:32.526][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:32.527][private$loadEntries] Creating entries from ids [3]: "159708966, 172860172, 172858129".
biodb.DEBUG[2025-03-15 16:02:32.528][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:32.529][cch$loadFileContent] Trying to load 3 files from cache: [3]: "159708966, 172860172, 172858129".
biodb.TRACE[2025-03-15 16:02:32.530][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-03-15 16:02:32.533][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/159708966.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172860172.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172858129.xml".
biodb.DEBUG[2025-03-15 16:02:32.533][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:32.534][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:32.535][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:32.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.546][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.553][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.553][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.559][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.560][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.566][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.572][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.573][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.578][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.579][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.585][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.610][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.611][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.613][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.619][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.620][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.625][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.626][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:32.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:32.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.713][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.717][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.718][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.723][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.724][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.729][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.730][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.736][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.736][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.738][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.742][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.754][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.761][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.781][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.781][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.787][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.794][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.795][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.800][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.801][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:32.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:32.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:32.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:32.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:32.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:32.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:32.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:32.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.896][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.897][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.903][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.909][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.910][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.915][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.916][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.921][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.922][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.928][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:32.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.955][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.956][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.962][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:32.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.969][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.969][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.975][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:33.083][self$createEntryFromContent] Accession numbers: 159708966, 172860172, 172858129.
biodb.DEBUG[2025-03-15 16:02:33.084][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:33.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.101][private$selectFields]
biodb.TRACE[2025-03-15 16:02:33.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:33.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:33.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.108][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.110][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.113][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:33.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.140][private$selectFields]
biodb.TRACE[2025-03-15 16:02:33.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:33.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:33.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.149][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.152][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-03-15 16:02:33.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.178][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.179][private$selectFields]
biodb.TRACE[2025-03-15 16:02:33.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:33.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:33.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.188][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:33.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.192][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-03-15 16:02:33.203][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:33.204][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:33.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:33.219][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:33.222][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:33.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:33.224][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:33.281][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:33.282][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:33.284][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:33.285][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:33.387][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:33.389][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-03-15 16:02:33.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-03-15 16:02:33.394][private$loadEntries] Creating entries from ids [3]: "172860061, 172846412, 172846254".
biodb.DEBUG[2025-03-15 16:02:33.394][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:33.396][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172860061, 172846412, 172846254".
biodb.TRACE[2025-03-15 16:02:33.396][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:33.397][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:33.398][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:33.399][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:33.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:33.400][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:33.412][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-03-15 16:02:33.414][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412,172846254/XML".
biodb.DEBUG[2025-03-15 16:02:33.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:33.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:33.417][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412,172846254/XML".
biodb.TRACE[2025-03-15 16:02:33.529][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412,172846254/XML).
biodb.TRACE[2025-03-15 16:02:33.704][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172860061.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172846412.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172846254.xml"
biodb.DEBUG[2025-03-15 16:02:33.706][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:33.707][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:33.708][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:33.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:33.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.735][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.736][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.741][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.742][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.748][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.748][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.754][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.760][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.761][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.766][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:33.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.769][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:33.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:33.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:33.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:33.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.790][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:33.791][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.797][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:33.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:33.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.803][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.804][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:33.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:33.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:33.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:33.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:33.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:33.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:33.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:33.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:33.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.902][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.903][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:33.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:33.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.914][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.915][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.920][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.926][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.927][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:33.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.932][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:33.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.938][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:33.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:33.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:33.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.956][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:33.957][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.963][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:33.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:33.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.969][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.970][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.976][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.977][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:34.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.085][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.086][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.091][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.092][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.098][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.099][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.104][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.105][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.111][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.118][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.127][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.137][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:34.138][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:34.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.141][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.147][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.148][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.150][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.154][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.155][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:34.264][self$createEntryFromContent] Accession numbers: 172860061, 172846412, 172846254.
biodb.DEBUG[2025-03-15 16:02:34.265][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:34.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.282][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.292][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.296][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-03-15 16:02:34.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.322][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.331][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.334][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-03-15 16:02:34.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.361][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846254].
biodb.DEBUG[2025-03-15 16:02:34.384][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:34.385][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.395][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:34.401][biodb::testThat]
biodb.INFO [2025-03-15 16:02:34.402][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-15 16:02:34.402][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:34.403][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:34.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:34.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:34.450][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:34.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-03-15 16:02:34.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:34.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-03-15 16:02:34.461][private$loadEntries] Creating entries from ids [2]: "172828488, 172781794".
biodb.DEBUG[2025-03-15 16:02:34.462][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:02:34.463][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172828488, 172781794".
biodb.TRACE[2025-03-15 16:02:34.464][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-03-15 16:02:34.468][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172828488.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172781794.xml".
biodb.DEBUG[2025-03-15 16:02:34.469][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:34.470][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:02:34.471][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:34.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.483][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.489][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.490][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.496][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.496][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.502][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.508][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.509][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.514][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.515][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.516][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.520][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.551][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:34.552][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.557][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.563][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.564][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.569][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.570][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.584][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:34.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.661][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.662][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.668][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.668][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.674][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.675][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.680][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.681][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.686][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.687][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.693][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:34.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.708][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:34.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.718][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:34.718][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:34.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.720][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.721][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.727][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.727][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.733][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.733][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:34.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:34.830][self$createEntryFromContent] Accession numbers: 172828488, 172781794.
biodb.DEBUG[2025-03-15 16:02:34.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:34.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.873][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.876][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.890][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.894][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-03-15 16:02:34.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.921][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.930][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.934][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172828488].
biodb.DEBUG[2025-03-15 16:02:34.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.960][private$selectFields]
biodb.TRACE[2025-03-15 16:02:34.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:34.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:34.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.970][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:34.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.974][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:34.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172781794].
biodb.DEBUG[2025-03-15 16:02:34.985][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:34.985][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:34.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:34.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:34.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:34.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:34.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:34.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:34.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:35.000][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:35.003][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:35.003][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:35.005][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:35.062][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:35.063][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:35.065][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:35.066][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:35.132][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:35.134][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-03-15 16:02:35.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-03-15 16:02:35.139][private$loadEntries] Creating entries from ids [2]: "172834528, 172830494".
biodb.DEBUG[2025-03-15 16:02:35.140][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:02:35.141][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172834528, 172830494".
biodb.TRACE[2025-03-15 16:02:35.142][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:35.143][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:35.144][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:35.145][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:35.145][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:35.146][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:35.147][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-03-15 16:02:35.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172834528,172830494/XML".
biodb.DEBUG[2025-03-15 16:02:35.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:35.151][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:35.152][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172834528,172830494/XML".
biodb.TRACE[2025-03-15 16:02:35.326][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172834528,172830494/XML).
biodb.TRACE[2025-03-15 16:02:35.534][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172834528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172830494.xml"
biodb.DEBUG[2025-03-15 16:02:35.536][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:35.537][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:02:35.538][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:35.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:35.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:35.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:35.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:35.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:35.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:35.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:35.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.567][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.568][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.575][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.575][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.582][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.582][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.589][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.595][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.596][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.603][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:35.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:35.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:35.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:35.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:35.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.630][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:35.631][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:35.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.637][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:35.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.644][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.645][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.651][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.652][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.654][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:35.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:35.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:35.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:35.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:35.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:35.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:35.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:35.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.753][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.754][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.760][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.761][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.767][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.768][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.774][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.775][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.781][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.782][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.789][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:35.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:35.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.795][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:35.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:35.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:35.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:35.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.816][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:35.817][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:35.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.819][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:35.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:35.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.821][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:35.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:35.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.826][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.827][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.833][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.833][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:35.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:35.940][self$createEntryFromContent] Accession numbers: 172834528, 172830494.
biodb.DEBUG[2025-03-15 16:02:35.941][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:35.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:35.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:35.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:35.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:35.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:35.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:35.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:35.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:35.960][private$selectFields]
biodb.TRACE[2025-03-15 16:02:35.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:35.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:35.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:35.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:35.970][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:35.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.974][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:35.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-03-15 16:02:35.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:35.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:35.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:35.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:35.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:35.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:35.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.004][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.014][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.019][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172834528].
biodb.DEBUG[2025-03-15 16:02:36.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.047][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.053][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.058][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.062][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172830494].
biodb.DEBUG[2025-03-15 16:02:36.074][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:36.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:36.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:36.131][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:36.134][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:36.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-03-15 16:02:36.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:36.138][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-03-15 16:02:36.139][private$loadEntries] Creating entries from ids [1]: "172851552".
biodb.DEBUG[2025-03-15 16:02:36.140][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:36.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172851552".
biodb.TRACE[2025-03-15 16:02:36.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:36.144][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172851552.xml".
biodb.DEBUG[2025-03-15 16:02:36.145][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:36.146][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:36.147][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:36.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.166][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.167][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.173][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.173][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.179][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.180][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.199][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:36.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:36.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:36.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:36.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:36.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:36.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.226][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:36.227][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:36.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.229][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:36.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.236][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:36.237][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.243][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:36.244][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:36.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:36.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:36.334][self$createEntryFromContent] Accession numbers: 172851552.
biodb.DEBUG[2025-03-15 16:02:36.335][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:36.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.353][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.364][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.368][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-03-15 16:02:36.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.396][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.412][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.417][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-03-15 16:02:36.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.450][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.452][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.464][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.465][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172851552].
biodb.DEBUG[2025-03-15 16:02:36.477][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:36.477][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:36.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:36.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:36.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:36.497][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:36.498][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:36.556][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:36.557][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:36.558][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:36.560][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:36.630][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:36.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-03-15 16:02:36.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-03-15 16:02:36.637][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:36.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.655][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.666][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.671][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-03-15 16:02:36.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.700][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.711][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.715][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-03-15 16:02:36.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.743][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.745][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.753][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.757][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846254].
biodb.DEBUG[2025-03-15 16:02:36.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:36.768][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:36.786][biodb::testThat]
biodb.INFO [2025-03-15 16:02:36.787][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-15 16:02:36.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:36.788][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:36.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:36.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:36.849][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:36.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:36.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:36.852][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:36.853][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:36.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.870][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.879][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.883][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-03-15 16:02:36.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.908][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.918][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856808].
biodb.DEBUG[2025-03-15 16:02:36.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.950][private$selectFields]
biodb.TRACE[2025-03-15 16:02:36.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:36.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:36.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:36.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.964][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:36.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:36.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856150].
biodb.DEBUG[2025-03-15 16:02:36.974][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:36.975][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:36.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:36.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:36.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:36.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:36.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:36.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:36.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:36.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:36.994][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-03-15 16:02:36.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:36.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-03-15 16:02:36.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:36.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:36.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.015][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.026][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.030][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:37.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.056][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.065][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.069][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.070][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-03-15 16:02:37.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.096][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.112][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.116][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172848182].
biodb.DEBUG[2025-03-15 16:02:37.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:37.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:37.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:37.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:37.190][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:37.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:37.192][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:37.193][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:37.195][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:37.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.213][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.223][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.227][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.237][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:37.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.253][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-03-15 16:02:37.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.292][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.301][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.303][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.307][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-03-15 16:02:37.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:37.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:37.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:37.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:37.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:37.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-03-15 16:02:37.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:37.340][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-03-15 16:02:37.342][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:37.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.359][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.360][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-03-15 16:02:37.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.408][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.409][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.419][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.422][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-03-15 16:02:37.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.448][private$selectFields]
biodb.TRACE[2025-03-15 16:02:37.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:37.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:37.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.456][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.457][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:37.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.461][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846254].
biodb.DEBUG[2025-03-15 16:02:37.471][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:37.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.498][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:37.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.503][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:37.504][biodb::testThat]
biodb.INFO [2025-03-15 16:02:37.505][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-03-15 16:02:37.506][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:37.506][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:37.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:37.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:37.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:37.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:37.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:37.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:37.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:37.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:37.555][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:37.555][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:37.557][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:37.613][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:37.614][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:37.615][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:37.616][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:37.688][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:37.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-03-15 16:02:37.693][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-03-15 16:02:37.695][private$loadEntries] Creating entries from ids [3]: "172867736, 44721786, 172865054".
biodb.DEBUG[2025-03-15 16:02:37.696][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:37.697][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172867736, 44721786, 172865054".
biodb.TRACE[2025-03-15 16:02:37.698][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:37.699][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:37.699][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:37.700][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:37.701][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:37.702][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:37.702][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-03-15 16:02:37.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867736,44721786,172865054/XML".
biodb.DEBUG[2025-03-15 16:02:37.706][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:37.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:37.707][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867736,44721786,172865054/XML".
biodb.TRACE[2025-03-15 16:02:37.855][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867736,44721786,172865054/XML).
biodb.TRACE[2025-03-15 16:02:38.077][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172867736.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/44721786.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172865054.xml"
biodb.DEBUG[2025-03-15 16:02:38.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:38.081][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:38.082][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:38.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.093][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.095][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.099][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.100][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.101][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.111][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.112][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.117][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.118][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.124][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.124][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.130][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.164][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:38.165][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:38.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.167][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.170][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.176][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.177][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.182][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.183][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:38.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.271][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.272][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.284][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.301][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.325][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:38.326][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:38.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:38.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.331][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.337][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.337][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.343][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.343][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.383][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:38.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.437][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.449][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.450][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.455][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.456][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.457][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.461][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.462][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.467][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.473][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.492][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:38.493][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.495][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:38.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:38.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.501][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.502][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:38.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.507][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.508][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.509][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:38.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:38.607][self$createEntryFromContent] Accession numbers: 172867736, 44721786, 172865054.
biodb.DEBUG[2025-03-15 16:02:38.608][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:38.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.625][private$selectFields]
biodb.TRACE[2025-03-15 16:02:38.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:38.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:38.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.631][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.635][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.638][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867736].
biodb.DEBUG[2025-03-15 16:02:38.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.671][private$selectFields]
biodb.TRACE[2025-03-15 16:02:38.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:38.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:38.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.681][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.685][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:38.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [44721786].
biodb.DEBUG[2025-03-15 16:02:38.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.711][private$selectFields]
biodb.TRACE[2025-03-15 16:02:38.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:38.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:38.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:38.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.724][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:38.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865054].
biodb.DEBUG[2025-03-15 16:02:38.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:38.736][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:38.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:38.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:38.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:38.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:38.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:38.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:38.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:38.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:38.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:38.754][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:38.756][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:38.815][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:38.816][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:38.817][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:38.818][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:38.882][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:38.884][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-03-15 16:02:38.887][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-03-15 16:02:38.889][private$loadEntries] Creating entries from ids [2]: "172858963, 172856044".
biodb.DEBUG[2025-03-15 16:02:38.889][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:02:38.891][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172858963, 172856044".
biodb.TRACE[2025-03-15 16:02:38.891][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:38.892][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:38.893][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:38.894][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:38.895][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:38.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:38.896][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-03-15 16:02:38.898][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172858963,172856044/XML".
biodb.DEBUG[2025-03-15 16:02:38.899][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:38.900][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:38.901][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172858963,172856044/XML".
biodb.TRACE[2025-03-15 16:02:39.024][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172858963,172856044/XML).
biodb.TRACE[2025-03-15 16:02:39.193][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172858963.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172856044.xml"
biodb.DEBUG[2025-03-15 16:02:39.195][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:39.196][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:02:39.197][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:39.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.209][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.216][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.217][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.219][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.220][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.222][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.223][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.223][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.225][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.229][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.230][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.232][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:39.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:39.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:39.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.258][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:39.259][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:39.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.261][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:39.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:39.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.263][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.267][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.268][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.274][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:39.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.351][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.357][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.358][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.364][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.365][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.371][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.371][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.378][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.380][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.384][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:39.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.388][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:39.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:39.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:39.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:39.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:39.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.410][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:39.411][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:39.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.413][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:39.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.420][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.426][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.427][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.453][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:39.526][self$createEntryFromContent] Accession numbers: 172858963, 172856044.
biodb.DEBUG[2025-03-15 16:02:39.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:39.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.545][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.551][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.559][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:39.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.585][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.595][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.596][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858963].
biodb.DEBUG[2025-03-15 16:02:39.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.636][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.644][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.646][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856044].
biodb.DEBUG[2025-03-15 16:02:39.662][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:39.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:39.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:39.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:39.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:39.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:39.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:39.701][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:39.703][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:39.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.721][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.730][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.731][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.735][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-03-15 16:02:39.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.763][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.773][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856808].
biodb.DEBUG[2025-03-15 16:02:39.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.802][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.803][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.812][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.813][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.816][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856150].
biodb.DEBUG[2025-03-15 16:02:39.827][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:39.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:39.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:39.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:39.846][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:39.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-03-15 16:02:39.848][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:39.849][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-03-15 16:02:39.850][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:39.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.874][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.890][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.897][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:39.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.941][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.951][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.955][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-03-15 16:02:39.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:39.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:39.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:39.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:39.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:39.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:39.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.987][private$selectFields]
biodb.TRACE[2025-03-15 16:02:39.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:39.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:39.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:39.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:39.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:39.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:39.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.001][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172848182].
biodb.DEBUG[2025-03-15 16:02:40.013][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:40.014][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:40.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:40.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:40.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:40.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:40.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:40.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:40.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:40.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:40.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:40.051][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:40.111][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:40.112][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:40.113][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:40.114][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:40.183][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:40.185][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-03-15 16:02:40.187][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-03-15 16:02:40.189][private$loadEntries] Creating entries from ids [2]: "172866121, 172865585".
biodb.DEBUG[2025-03-15 16:02:40.190][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-03-15 16:02:40.191][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172866121, 172865585".
biodb.TRACE[2025-03-15 16:02:40.192][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:40.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:40.194][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:40.195][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:40.196][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:40.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:40.197][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-03-15 16:02:40.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866121,172865585/XML".
biodb.DEBUG[2025-03-15 16:02:40.201][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:40.201][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:40.202][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866121,172865585/XML".
biodb.TRACE[2025-03-15 16:02:40.299][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866121,172865585/XML).
biodb.TRACE[2025-03-15 16:02:40.547][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172866121.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172865585.xml"
biodb.DEBUG[2025-03-15 16:02:40.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:40.550][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-03-15 16:02:40.551][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:40.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:40.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:40.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:40.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:40.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:40.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:40.562][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.569][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.569][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.575][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.576][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.581][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.582][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.587][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.588][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.593][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.594][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.599][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:40.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.605][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:40.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:40.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:40.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.624][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:40.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:40.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.627][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:40.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.633][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.634][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.639][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.640][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:40.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:40.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:40.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:40.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:40.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:40.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:40.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.738][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.739][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.745][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.751][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.757][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.757][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.763][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.763][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.769][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:40.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:40.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:40.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:40.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.793][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:40.794][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.800][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:40.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.802][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.806][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.807][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.813][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.813][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:40.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:40.907][self$createEntryFromContent] Accession numbers: 172866121, 172865585.
biodb.DEBUG[2025-03-15 16:02:40.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:40.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:40.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:40.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:40.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:40.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:40.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.931][private$selectFields]
biodb.TRACE[2025-03-15 16:02:40.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:40.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:40.934][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.942][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.946][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:40.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:40.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:40.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:40.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:40.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:40.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.974][private$selectFields]
biodb.TRACE[2025-03-15 16:02:40.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:40.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:40.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.983][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.984][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:40.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.988][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:40.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866121].
biodb.DEBUG[2025-03-15 16:02:40.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:40.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:41.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:41.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:41.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:41.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:41.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:41.014][private$selectFields]
biodb.TRACE[2025-03-15 16:02:41.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:41.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:41.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:41.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.020][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.023][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.023][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:41.024][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:41.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865585].
biodb.DEBUG[2025-03-15 16:02:41.039][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:41.040][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:41.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:41.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:41.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:41.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:41.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:41.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:41.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:41.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:41.057][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:41.058][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:41.059][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:41.116][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:41.117][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:41.118][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:41.119][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:41.185][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:41.187][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-03-15 16:02:41.190][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-03-15 16:02:41.192][private$loadEntries] Creating entries from ids [3]: "172867760, 152774370, 69945057".
biodb.DEBUG[2025-03-15 16:02:41.193][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:41.194][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172867760, 152774370, 69945057".
biodb.TRACE[2025-03-15 16:02:41.195][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:41.196][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:41.197][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:41.197][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:41.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:41.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:41.200][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-03-15 16:02:41.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867760,152774370,69945057/XML".
biodb.DEBUG[2025-03-15 16:02:41.203][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:41.204][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:41.205][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867760,152774370,69945057/XML".
biodb.TRACE[2025-03-15 16:02:41.315][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172867760,152774370,69945057/XML).
biodb.TRACE[2025-03-15 16:02:41.551][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172867760.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/152774370.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69945057.xml"
biodb.DEBUG[2025-03-15 16:02:41.554][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:41.555][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:41.556][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:41.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:41.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:41.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:41.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:41.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:41.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:41.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:41.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.575][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.581][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.582][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.587][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.588][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.594][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.595][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.607][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.633][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:41.634][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.640][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:41.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:41.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.646][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.647][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.653][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.654][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:41.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:41.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:41.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:41.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:41.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:41.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:41.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:41.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:41.752][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.759][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.766][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.793][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.802][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.819][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:41.820][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.821][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.825][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:41.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:41.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:41.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.832][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.834][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.839][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.840][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:41.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:41.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:41.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:41.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:41.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:41.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:41.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:41.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:41.929][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.936][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.936][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.955][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.956][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.961][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.962][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.968][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:41.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.973][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:41.998][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:41.999][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:42.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.004][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:42.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:42.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.007][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:42.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:42.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.017][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:42.018][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:42.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:42.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:42.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:42.124][self$createEntryFromContent] Accession numbers: 172867760, 152774370, 69945057.
biodb.DEBUG[2025-03-15 16:02:42.124][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.142][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.153][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.156][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867760].
biodb.DEBUG[2025-03-15 16:02:42.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.184][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.193][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.197][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [152774370].
biodb.DEBUG[2025-03-15 16:02:42.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.231][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.237][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.241][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.245][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [69945057].
biodb.DEBUG[2025-03-15 16:02:42.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:42.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:42.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:42.290][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:42.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:42.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-03-15 16:02:42.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:42.296][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-03-15 16:02:42.297][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.315][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.325][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.329][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867736].
biodb.DEBUG[2025-03-15 16:02:42.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.356][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.370][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [44721786].
biodb.DEBUG[2025-03-15 16:02:42.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.397][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.407][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.411][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865054].
biodb.DEBUG[2025-03-15 16:02:42.423][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:42.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:42.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:42.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:42.441][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:42.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-03-15 16:02:42.443][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:42.444][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-03-15 16:02:42.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.463][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.473][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.477][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:42.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.511][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.516][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.521][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.525][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858963].
biodb.DEBUG[2025-03-15 16:02:42.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.554][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.564][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.568][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856044].
biodb.DEBUG[2025-03-15 16:02:42.580][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:42.580][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:42.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:42.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:42.616][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:42.617][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:42.618][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:42.619][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:42.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.638][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.648][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.651][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.651][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-03-15 16:02:42.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.680][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.690][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.691][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.693][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856808].
biodb.DEBUG[2025-03-15 16:02:42.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.720][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.730][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.734][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172856150].
biodb.DEBUG[2025-03-15 16:02:42.745][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:42.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:42.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:42.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:42.763][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:42.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-03-15 16:02:42.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:42.766][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-03-15 16:02:42.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.791][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.801][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.805][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-03-15 16:02:42.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.832][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.840][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.841][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.845][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-03-15 16:02:42.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.872][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.880][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.882][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.886][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172848182].
biodb.DEBUG[2025-03-15 16:02:42.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:42.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:42.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:42.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:42.932][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:42.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-03-15 16:02:42.934][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:42.936][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-03-15 16:02:42.937][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:42.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.955][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.965][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.969][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:42.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:42.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:42.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:42.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:42.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:42.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:42.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:42.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.996][private$selectFields]
biodb.TRACE[2025-03-15 16:02:42.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:42.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:42.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:42.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.010][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866121].
biodb.DEBUG[2025-03-15 16:02:43.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.037][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.051][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.053][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.058][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865585].
biodb.DEBUG[2025-03-15 16:02:43.068][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:43.069][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:43.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:43.085][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:43.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:43.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-03-15 16:02:43.089][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:43.091][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-03-15 16:02:43.092][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:43.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.110][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.119][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.123][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867760].
biodb.DEBUG[2025-03-15 16:02:43.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.151][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.161][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.164][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.165][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [152774370].
biodb.DEBUG[2025-03-15 16:02:43.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.192][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [69945057].
biodb.DEBUG[2025-03-15 16:02:43.218][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:43.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:43.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:43.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:43.277][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:43.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:43.279][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:43.334][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:43.335][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:43.336][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:43.337][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:43.402][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:43.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-03-15 16:02:43.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-03-15 16:02:43.409][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:43.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.428][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.437][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.438][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867736].
biodb.DEBUG[2025-03-15 16:02:43.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.478][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.483][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.488][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.488][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.492][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:43.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.519][private$selectFields]
biodb.TRACE[2025-03-15 16:02:43.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:43.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:43.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.528][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.528][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.529][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:43.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.532][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.533][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:43.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:43.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [44721786].
biodb.DEBUG[2025-03-15 16:02:43.545][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:43.546][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:43.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:43.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:43.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:43.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:43.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:43.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:43.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:43.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:43.564][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:43.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:43.566][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:43.629][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:43.630][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:43.632][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:43.633][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:44.132][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:44.134][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-03-15 16:02:44.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-03-15 16:02:44.139][private$loadEntries] Creating entries from ids [3]: "172866627, 172865380, 172864565".
biodb.DEBUG[2025-03-15 16:02:44.140][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:02:44.141][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172866627, 172865380, 172864565".
biodb.TRACE[2025-03-15 16:02:44.142][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-03-15 16:02:44.143][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:44.144][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:44.145][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:44.145][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:44.146][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:44.147][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-03-15 16:02:44.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866627,172865380,172864565/XML".
biodb.DEBUG[2025-03-15 16:02:44.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:44.151][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:44.152][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866627,172865380,172864565/XML".
biodb.TRACE[2025-03-15 16:02:44.310][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172866627,172865380,172864565/XML).
biodb.TRACE[2025-03-15 16:02:44.578][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172866627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172865380.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172864565.xml"
biodb.DEBUG[2025-03-15 16:02:44.580][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:44.581][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:02:44.582][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:44.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:44.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:44.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:44.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:44.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:44.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:44.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:44.594][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.601][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.602][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.604][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.608][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.611][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.611][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.615][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.617][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.643][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:44.644][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.646][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.653][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.654][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:44.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:44.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:44.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:44.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:44.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:44.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:44.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:44.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:44.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.732][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.733][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.739][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.740][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.745][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.746][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.758][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.759][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.764][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.791][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:44.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.795][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.802][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.803][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.809][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.810][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:44.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:44.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:44.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:44.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:44.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:44.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:44.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:44.900][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.907][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.908][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.921][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.922][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.928][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.929][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.934][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.935][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.940][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:44.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:44.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.946][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.965][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:44.965][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:44.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.968][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.974][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.975][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.986][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.987][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:45.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:45.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:45.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:45.098][self$createEntryFromContent] Accession numbers: 172866627, 172865380, 172864565.
biodb.DEBUG[2025-03-15 16:02:45.099][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:45.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.117][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.122][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.131][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866627].
biodb.DEBUG[2025-03-15 16:02:45.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.158][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.164][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.168][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.172][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865380].
biodb.DEBUG[2025-03-15 16:02:45.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.200][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.202][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.210][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.213][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172864565].
biodb.DEBUG[2025-03-15 16:02:45.224][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:45.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:45.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:45.262][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:45.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:45.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:45.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:45.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:45.271][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:45.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.289][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.298][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.302][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:45.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.330][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.340][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.344][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-03-15 16:02:45.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.371][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.380][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.384][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-03-15 16:02:45.395][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:45.396][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:45.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:45.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:45.413][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:45.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-03-15 16:02:45.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:45.416][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-03-15 16:02:45.418][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:45.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.435][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.437][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.445][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-03-15 16:02:45.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.476][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.485][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.486][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.490][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-03-15 16:02:45.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.517][private$selectFields]
biodb.TRACE[2025-03-15 16:02:45.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:45.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:45.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.527][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:45.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.538][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:45.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846254].
biodb.DEBUG[2025-03-15 16:02:45.550][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:45.551][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:45.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:45.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:45.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:45.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:45.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:45.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:45.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:45.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:45.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:45.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:45.591][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:45.646][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:45.647][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:45.649][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:45.650][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:45.757][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:45.759][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-03-15 16:02:45.762][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-03-15 16:02:45.764][private$loadEntries] Creating entries from ids [1]: "172862596".
biodb.DEBUG[2025-03-15 16:02:45.765][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:45.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172862596".
biodb.TRACE[2025-03-15 16:02:45.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:45.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:45.769][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:45.770][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:45.771][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:45.771][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-03-15 16:02:45.772][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-15 16:02:45.773][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862596/XML".
biodb.DEBUG[2025-03-15 16:02:45.775][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:45.776][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:45.777][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862596/XML".
biodb.TRACE[2025-03-15 16:02:45.889][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172862596/XML).
biodb.TRACE[2025-03-15 16:02:46.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172862596.xml"
biodb.DEBUG[2025-03-15 16:02:46.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:46.035][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:46.036][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-03-15 16:02:46.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.054][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.055][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.060][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.061][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.066][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.079][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.079][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.085][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:46.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-03-15 16:02:46.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:46.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:46.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:46.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:46.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:46.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:46.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.110][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:46.111][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:46.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.113][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:46.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:46.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-03-15 16:02:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:46.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:46.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.126][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:46.126][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:46.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:46.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:46.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-03-15 16:02:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-03-15 16:02:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-03-15 16:02:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.159][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-03-15 16:02:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-03-15 16:02:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:46.212][self$createEntryFromContent] Accession numbers: 172862596.
biodb.DEBUG[2025-03-15 16:02:46.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:46.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.241][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.250][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.251][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.255][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:46.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.284][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.294][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866121].
biodb.DEBUG[2025-03-15 16:02:46.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.326][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.337][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.340][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862596].
biodb.DEBUG[2025-03-15 16:02:46.351][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:46.352][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:46.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:46.367][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:46.370][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:46.370][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:46.372][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-03-15 16:02:46.427][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-03-15 16:02:46.428][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:02:46.429][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:02:46.430][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-03-15 16:02:46.498][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:46.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-03-15 16:02:46.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-03-15 16:02:46.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:46.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.523][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.528][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.532][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.533][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.537][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867760].
biodb.DEBUG[2025-03-15 16:02:46.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.564][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.574][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.578][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [152774370].
biodb.DEBUG[2025-03-15 16:02:46.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.605][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.615][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.626][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [69945057].
biodb.DEBUG[2025-03-15 16:02:46.639][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:46.640][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:46.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:46.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:46.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:46.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-03-15 16:02:46.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:46.680][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-03-15 16:02:46.681][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:46.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.698][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.702][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.712][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867736].
biodb.DEBUG[2025-03-15 16:02:46.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.741][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.751][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.755][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:46.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.783][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.794][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.798][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [44721786].
biodb.DEBUG[2025-03-15 16:02:46.809][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:46.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:46.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:46.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:46.828][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:46.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-03-15 16:02:46.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:46.831][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-03-15 16:02:46.833][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:46.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.850][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.861][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.864][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866627].
biodb.DEBUG[2025-03-15 16:02:46.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.892][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.909][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.915][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172865380].
biodb.DEBUG[2025-03-15 16:02:46.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.943][private$selectFields]
biodb.TRACE[2025-03-15 16:02:46.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:46.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:46.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.952][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:46.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.956][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:46.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172864565].
biodb.DEBUG[2025-03-15 16:02:46.968][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:46.969][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:46.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:46.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:46.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:46.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:46.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:46.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:46.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:47.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:47.005][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:47.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:47.007][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:47.008][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:47.009][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:47.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.027][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.037][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.040][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.041][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:47.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.068][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.068][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.079][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.083][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-03-15 16:02:47.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.111][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.121][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.125][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-03-15 16:02:47.137][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:47.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:47.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:47.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:47.155][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:47.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-03-15 16:02:47.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:47.158][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-03-15 16:02:47.159][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:47.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.176][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.178][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.190][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.192][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.196][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-03-15 16:02:47.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.223][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.232][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.233][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.237][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-03-15 16:02:47.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.265][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.275][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.279][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846254].
biodb.DEBUG[2025-03-15 16:02:47.290][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:47.291][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:47.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:47.324][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:47.326][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:47.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-03-15 16:02:47.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:47.329][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-03-15 16:02:47.331][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:47.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.349][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.359][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.363][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-03-15 16:02:47.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.391][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.401][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.405][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172866121].
biodb.DEBUG[2025-03-15 16:02:47.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.433][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.443][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862596].
biodb.DEBUG[2025-03-15 16:02:47.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:47.459][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:47.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:47.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:47.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:47.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-03-15 16:02:47.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:47.487][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-03-15 16:02:47.488][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:47.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.506][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.508][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.509][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.511][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.512][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.513][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.516][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.519][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172867760].
biodb.DEBUG[2025-03-15 16:02:47.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.547][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.557][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.561][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [152774370].
biodb.DEBUG[2025-03-15 16:02:47.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.589][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.599][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-03-15 16:02:47.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.603][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-03-15 16:02:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [69945057].
biodb.DEBUG[2025-03-15 16:02:47.614][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:47.614][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:47.642][biodb::testThat]
biodb.INFO [2025-03-15 16:02:47.643][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-03-15 16:02:47.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:47.644][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:47.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:47.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:47.696][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:47.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:47.697][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:47.699][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:47.700][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:47.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:47.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:47.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:47.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:47.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:47.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:47.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.835][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:47.836][private$selectFields]
biodb.TRACE[2025-03-15 16:02:47.837][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:47.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:47.838][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:47.839][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.842][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.843][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.845][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.846][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.848][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.849][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.851][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.852][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.854][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.857][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:47.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:47.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:47.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.866][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:47.867][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:47.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.869][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:47.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.882][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.882][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.885][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.886][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.891][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.892][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.895][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.904][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.905][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.907][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:47.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:47.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:47.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.917][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:47.917][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.920][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:47.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:47.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.932][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.933][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.935][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.936][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.938][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:47.939][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:47.940][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.942][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.943][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.946][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.947][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:47.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.949][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.950][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:47.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.952][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.953][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:47.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:47.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.959][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:47.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:47.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:47.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.969][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:47.970][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:47.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:47.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:47.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:47.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:47.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.984][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.985][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:47.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.988][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.988][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:47.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.991][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172859178, 1-(3-fluoro-N-methyl-anilino)cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)-1-cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)cyclobutane-1-carbonitrile, 1-[(3-fluorophenyl)-methyl-amino]cyclobutane-1-carbonitrile, ...].
biodb.DEBUG[2025-03-15 16:02:48.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:48.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:48.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:48.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:48.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:48.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:48.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.263][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.264][private$selectFields]
biodb.TRACE[2025-03-15 16:02:48.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:48.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:48.266][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.273][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.274][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.276][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.277][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.279][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.280][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.287][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.289][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.298][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.300][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.301][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.310][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.316][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.317][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.319][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.328][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.329][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.331][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.332][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.337][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.338][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.339][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.350][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.351][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.371][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.372][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.372][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.375][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.375][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.378][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.379][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.381][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.382][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.385][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.387][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.388][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.390][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.399][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.400][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.414][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.415][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.417][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.418][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172856808, N-tetrahydrofuran-3-yl-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(3-oxolanyl)-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(oxolan-3-yl)-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(oxolan-3-yl)-1H-pyrazolo[4,3-b]pyridin-7-amine, ...].
biodb.DEBUG[2025-03-15 16:02:48.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:48.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:48.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:48.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:48.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:48.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:48.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.688][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.688][private$selectFields]
biodb.TRACE[2025-03-15 16:02:48.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:48.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:48.690][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.694][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.695][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.697][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.698][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.703][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.703][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.706][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.706][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.708][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.709][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.717][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.718][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.722][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.729][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.731][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.732][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.734][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.737][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.740][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.741][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.743][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.744][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.746][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.747][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.749][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.752][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.754][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.763][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.763][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.765][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.777][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.778][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.779][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.780][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.781][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.783][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.784][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:48.785][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.798][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.806][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.807][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.818][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.827][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.833][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.834][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.837][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.839][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:48.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:48.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172856150, 5-isoquinolylcarbamothioic S-acid, 5-isoquinolinylcarbamothioic S-acid, isoquinolin-5-ylcarbamothioic S-acid, isoquinolin-5-ylcarbamothioic S-acid, ...].
biodb.DEBUG[2025-03-15 16:02:48.992][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:48.992][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:48.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:48.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:48.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:49.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:49.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:49.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:49.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:49.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:49.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:49.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-03-15 16:02:49.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:49.013][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-03-15 16:02:49.014][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:49.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:49.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:49.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:49.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:49.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:49.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:49.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.126][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.127][private$selectFields]
biodb.TRACE[2025-03-15 16:02:49.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:49.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:49.129][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.132][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.133][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.136][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.139][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.140][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.143][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.145][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.146][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.158][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.159][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.161][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.173][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.174][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.176][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.177][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.179][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.182][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.183][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.185][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.186][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.188][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.189][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.192][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.194][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.195][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.198][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.207][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.208][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.216][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.222][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.222][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.225][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.226][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.227][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.228][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:49.229][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:49.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.232][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.232][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.233][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.236][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.236][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.239][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.243][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.245][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.246][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.263][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.263][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.264][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.270][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.270][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.276][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172862279, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-03-15 16:02:49.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:49.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:49.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:49.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:49.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:49.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:49.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.536][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.537][private$selectFields]
biodb.TRACE[2025-03-15 16:02:49.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:49.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:49.539][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.543][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.544][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.546][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.547][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.555][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.556][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.559][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.574][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.577][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.589][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.590][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.592][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.593][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.599][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.599][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.601][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.604][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.611][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.612][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.623][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.624][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.633][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.640][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.640][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.643][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.644][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.646][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:49.647][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:49.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.651][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.652][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.654][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.663][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.686][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.687][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.689][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.690][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.692][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172849147, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, ...].
biodb.DEBUG[2025-03-15 16:02:49.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:49.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:49.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:49.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:49.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:49.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:49.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:49.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.961][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.962][private$selectFields]
biodb.TRACE[2025-03-15 16:02:49.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:49.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:49.964][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:49.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:49.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:49.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:49.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.971][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.972][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:49.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.975][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.975][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:49.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.978][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.979][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:49.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.981][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.982][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:49.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.984][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:49.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:49.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:49.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:49.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:49.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.994][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:49.994][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:49.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:49.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:49.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.008][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.009][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.012][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.015][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.017][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.018][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.019][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.020][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.021][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.023][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.025][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.027][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.028][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.033][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.043][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.043][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.051][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.054][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.058][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.058][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.060][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.061][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.064][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:50.064][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:50.065][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.067][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.068][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.069][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.078][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.081][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.082][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.084][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.085][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.087][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.088][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.089][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.090][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.095][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.099][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.101][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.105][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.108][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.111][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.112][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.114][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.115][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.118][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172848182, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, ...].
biodb.DEBUG[2025-03-15 16:02:50.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:50.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:50.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:50.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:50.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:50.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:50.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:50.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:50.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:50.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:50.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:50.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-03-15 16:02:50.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:50.287][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-03-15 16:02:50.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:50.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:50.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:50.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:50.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:50.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.408][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.409][private$selectFields]
biodb.TRACE[2025-03-15 16:02:50.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:50.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:50.411][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.418][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.419][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.421][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.422][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.425][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.427][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.428][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.439][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.440][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.453][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.457][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.460][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.460][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.462][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.465][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.466][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.467][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.468][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.469][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.470][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.471][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.473][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.474][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.475][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.477][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.478][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.483][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.489][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.490][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.498][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.504][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.505][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.507][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.508][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.509][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.510][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.511][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.512][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.513][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.514][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.518][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.518][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.521][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.523][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.528][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.532][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.541][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.543][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.544][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.550][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.556][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.556][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.563][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172859178, 1-(3-fluoro-N-methyl-anilino)cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)-1-cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)cyclobutane-1-carbonitrile, 1-[(3-fluorophenyl)-methyl-amino]cyclobutane-1-carbonitrile, ...].
biodb.DEBUG[2025-03-15 16:02:50.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:50.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:50.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:50.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:50.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:50.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:50.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.842][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.843][private$selectFields]
biodb.TRACE[2025-03-15 16:02:50.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:50.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:50.845][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.848][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.849][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.850][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.852][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.853][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.856][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.859][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.860][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.862][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.863][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.867][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.874][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.875][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.883][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.889][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.890][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.892][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.893][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.895][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.895][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.898][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.907][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.908][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.911][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.925][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.926][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.940][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.941][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.944][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.947][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.947][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.950][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.950][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:50.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:50.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.954][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.955][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:50.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.957][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:50.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.960][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.961][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:50.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.964][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.966][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.967][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:50.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.969][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:50.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:50.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:50.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:50.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.975][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.977][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:50.978][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:50.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.981][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:50.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:50.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.985][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:50.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:50.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.990][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:50.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.992][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:50.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.995][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.996][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:50.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:50.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:50.998][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.092][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172856808, N-tetrahydrofuran-3-yl-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(3-oxolanyl)-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(oxolan-3-yl)-1H-pyrazolo[4,3-b]pyridin-7-amine, N-(oxolan-3-yl)-1H-pyrazolo[4,3-b]pyridin-7-amine, ...].
biodb.DEBUG[2025-03-15 16:02:51.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:51.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:51.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:51.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:51.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:51.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:51.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.268][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.269][private$selectFields]
biodb.TRACE[2025-03-15 16:02:51.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:51.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:51.271][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.275][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.276][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.278][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.279][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.281][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.282][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.284][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.284][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.287][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.288][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.290][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.298][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.299][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.301][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.304][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.308][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.313][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.314][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.316][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.317][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.319][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.320][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.328][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.329][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.337][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.338][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.341][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.341][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.343][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.344][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.355][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.356][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.365][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.371][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.373][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.374][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.376][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.377][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.379][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.380][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.384][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.385][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.387][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.388][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.390][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.393][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.393][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.396][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.407][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.408][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.418][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.422][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.423][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.425][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.426][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.428][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172856150, 5-isoquinolylcarbamothioic S-acid, 5-isoquinolinylcarbamothioic S-acid, isoquinolin-5-ylcarbamothioic S-acid, isoquinolin-5-ylcarbamothioic S-acid, ...].
biodb.DEBUG[2025-03-15 16:02:51.590][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:51.591][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:51.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:51.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:51.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:51.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:51.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:51.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:51.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:51.608][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:51.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:51.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-03-15 16:02:51.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:51.613][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-03-15 16:02:51.615][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:51.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:51.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:51.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:51.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:51.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:51.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:51.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.735][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.736][private$selectFields]
biodb.TRACE[2025-03-15 16:02:51.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:51.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:51.738][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:51.739][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.742][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.743][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.745][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.749][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.749][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.753][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.755][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.756][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.767][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.768][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.776][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.782][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.783][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.785][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.786][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.788][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.789][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.802][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.806][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.818][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:51.818][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.832][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.836][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.839][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.839][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:51.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.841][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:51.842][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:51.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.856][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.857][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.859][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.860][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.863][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.863][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.866][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.885][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:51.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:51.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.891][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.892][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:51.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.894][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.895][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:51.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.898][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:51.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:51.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172862279, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-03-15 16:02:52.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:52.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:52.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:52.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:52.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:52.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:52.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.163][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:52.164][private$selectFields]
biodb.TRACE[2025-03-15 16:02:52.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:52.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:52.166][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:52.167][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.173][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.174][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.176][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.177][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.180][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.180][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.182][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.183][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.185][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.194][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.195][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.203][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.210][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.210][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.213][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.213][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.215][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.216][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.218][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.220][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.225][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.227][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.227][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.228][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.230][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.232][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.233][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.234][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.245][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.245][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.259][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.260][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.262][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.263][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.265][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.266][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.268][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:52.269][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:52.270][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.273][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.274][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.276][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.277][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.279][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.280][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.282][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.286][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.311][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.312][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.314][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172849147, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, magnesium;cyclopropane;dibromide, ...].
biodb.DEBUG[2025-03-15 16:02:52.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:52.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:52.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:52.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:52.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:52.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:52.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.584][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:52.585][private$selectFields]
biodb.TRACE[2025-03-15 16:02:52.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:52.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:52.587][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:52.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.591][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.591][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.594][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.595][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.597][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.598][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.600][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.601][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.603][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.604][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.623][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.624][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.628][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.631][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.638][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.644][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.644][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.645][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.651][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.651][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.654][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.663][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.675][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:52.676][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:52.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.687][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.691][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.691][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.694][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.694][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.697][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.697][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:52.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.700][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:52.700][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:52.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.704][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.705][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.707][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.708][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.710][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.711][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.713][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.714][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.716][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.717][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.722][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.729][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.732][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.735][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.742][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.742][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.744][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.745][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.746][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.748][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:52.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172848182, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, phosphoryl trichloride;dihydrochloride, ...].
biodb.DEBUG[2025-03-15 16:02:52.908][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:52.909][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:52.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:52.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:52.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:52.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:52.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:52.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:52.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:52.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:52.959][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:52.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:52.961][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:52.962][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:52.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:52.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:52.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:52.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:52.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:52.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:52.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:52.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.073][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.074][private$selectFields]
biodb.TRACE[2025-03-15 16:02:53.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:53.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:53.076][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.079][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.079][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.080][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.085][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.086][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.088][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.089][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.090][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.091][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.092][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.104][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.105][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.122][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.129][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.130][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.132][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.142][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.145][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.146][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.150][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.153][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.154][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.156][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.166][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.169][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.175][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.182][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.185][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.186][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.189][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:53.189][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:53.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.193][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.194][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.197][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.198][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.200][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.201][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.203][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.204][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.206][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.207][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.209][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.231][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.232][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.235][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.235][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.238][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [159708966, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, ...].
biodb.DEBUG[2025-03-15 16:02:53.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:53.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:53.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:53.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:53.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:53.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:53.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.509][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.509][private$selectFields]
biodb.TRACE[2025-03-15 16:02:53.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:53.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:53.511][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.515][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.516][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.518][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.518][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.519][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.521][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.524][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.527][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.528][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.530][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.539][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.539][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.540][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.542][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.549][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.551][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.555][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.556][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.558][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.559][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.561][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.565][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.565][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.568][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.569][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.571][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.572][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.575][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.577][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.578][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.590][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.591][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.596][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.606][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.608][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.609][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.611][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.612][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.619][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.620][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.622][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.624][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.630][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.631][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.637][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.640][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.641][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.656][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.657][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.659][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.660][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.662][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.762][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172860172, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, ...].
biodb.DEBUG[2025-03-15 16:02:53.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:53.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:53.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:53.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:53.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:53.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:53.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:53.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.937][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.990][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.991][private$selectFields]
biodb.TRACE[2025-03-15 16:02:53.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:53.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:53.993][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:53.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:53.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:53.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:53.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:53.997][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.998][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:53.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.001][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.001][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.003][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.007][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.007][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.010][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.010][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.015][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.022][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.023][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.037][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.037][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.038][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.047][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.048][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.050][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.051][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.053][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.054][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.056][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.057][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.059][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.060][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.067][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.071][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.072][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.073][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.086][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.087][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.089][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.089][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.090][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.092][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.093][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.096][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.097][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.098][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.100][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.101][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.103][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.104][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.106][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.107][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.109][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.110][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.112][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.119][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.122][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.123][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.125][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.132][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.134][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.138][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.139][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.141][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.142][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.144][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:54.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172858129, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-azanylpropyl)cyclooctatetraenecarboxamide, ...].
biodb.DEBUG[2025-03-15 16:02:54.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:54.314][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:54.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:54.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:54.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:54.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:54.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:54.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:54.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:54.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:54.333][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:54.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-03-15 16:02:54.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:54.336][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-03-15 16:02:54.338][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:54.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:54.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:54.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:54.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:54.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:54.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:54.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.454][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.454][private$selectFields]
biodb.TRACE[2025-03-15 16:02:54.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:54.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:54.456][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.460][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.461][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.464][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.464][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.468][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.470][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.471][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.473][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.474][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.475][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.477][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.483][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.486][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.487][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.489][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.502][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.509][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.511][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.511][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.518][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.518][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.519][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.521][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.521][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.522][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.524][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.525][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.527][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.530][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.530][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.531][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.534][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.539][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.543][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.544][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.545][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.546][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.547][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.556][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.560][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.561][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.563][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.564][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.566][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.567][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.571][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.572][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.574][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.575][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.578][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.578][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.581][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.582][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.584][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.585][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.597][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.598][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.600][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.612][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.615][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.616][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.618][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172860061, (1R)-1-amino-3-azido-1-(4-chlorophenyl)propan-1-ol, (1R)-1-amino-3-azido-1-(4-chlorophenyl)-1-propanol, (1R)-1-amino-3-azido-1-(4-chlorophenyl)propan-1-ol, (1R)-1-azanyl-3-azido-1-(4-chlorophenyl)propan-1-ol, ...].
biodb.DEBUG[2025-03-15 16:02:54.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:54.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:54.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:54.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:54.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:54.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:54.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.904][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.904][private$selectFields]
biodb.TRACE[2025-03-15 16:02:54.905][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:54.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:54.907][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:54.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.917][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.918][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.920][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.923][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.924][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.935][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.936][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.944][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.950][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.951][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.953][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.954][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.957][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:54.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:54.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.960][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.960][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.963][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.964][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.966][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.966][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.968][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.969][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.971][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.972][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.975][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:54.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:54.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:54.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.984][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:54.985][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:54.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:54.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:54.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:54.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:54.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:54.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.000][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.000][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.003][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.004][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.006][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.007][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.008][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.011][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.014][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.015][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.017][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.018][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.020][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.021][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.023][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.042][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.043][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.059][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.059][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.062][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172846412, 2-phenylthieno[3,2-c]pyridin-4-amine, 2-phenyl-4-thieno[3,2-c]pyridinamine, 2-phenylthieno[3,2-c]pyridin-4-amine, 2-phenylthieno[3,2-c]pyridin-4-amine, ...].
biodb.DEBUG[2025-03-15 16:02:55.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:55.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:55.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:55.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:55.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:55.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:55.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:55.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.344][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.345][private$selectFields]
biodb.TRACE[2025-03-15 16:02:55.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:55.346][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:55.347][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.348][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.352][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.354][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.355][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.358][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.359][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.365][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.366][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.368][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.378][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.380][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.387][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.393][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.394][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.396][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.397][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.399][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.402][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.403][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.405][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.406][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.408][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.409][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.411][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.412][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.414][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.415][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.418][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.426][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.427][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.429][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.442][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.443][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.445][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.446][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.449][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:55.450][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:55.450][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.453][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.454][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.456][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.457][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.459][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.460][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.463][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.464][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.466][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.478][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.478][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.484][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.491][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.492][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.494][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.495][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.497][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172846254, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-03-15 16:02:55.658][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:55.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:55.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:55.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:55.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:55.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:55.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:55.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:55.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:55.680][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:55.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:55.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-03-15 16:02:55.684][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:55.685][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-03-15 16:02:55.687][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:55.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:55.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:55.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:55.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:55.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:55.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:55.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:55.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.807][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.807][private$selectFields]
biodb.TRACE[2025-03-15 16:02:55.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:55.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:55.810][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:55.811][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.813][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.814][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.817][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.818][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.819][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.820][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.821][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.823][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.824][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.826][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.827][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.840][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.848][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.848][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.857][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.863][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.864][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.866][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.867][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.871][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.876][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.877][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.881][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.883][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.884][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.889][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.890][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.901][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:55.902][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:55.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.916][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.917][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.919][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.920][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.922][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.923][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.925][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:55.926][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:55.926][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.932][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.933][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.935][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.936][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:55.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.938][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.939][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:55.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:55.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.944][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:55.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:55.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:55.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:55.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.953][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.959][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:55.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:55.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.965][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.966][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:55.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.968][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.969][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:55.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.971][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:55.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:55.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [159708966, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, ...].
biodb.DEBUG[2025-03-15 16:02:56.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:56.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:56.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:56.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:56.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:56.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:56.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.250][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.251][private$selectFields]
biodb.TRACE[2025-03-15 16:02:56.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:56.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:56.253][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.257][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.258][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.260][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.261][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.263][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.264][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.266][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.267][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.269][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.270][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.281][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.282][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.284][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.297][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.298][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.303][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.304][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.310][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.311][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.313][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.314][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.317][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.319][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.320][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.322][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.323][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.325][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.333][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.334][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.337][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.342][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.345][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.348][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.349][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.358][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.359][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.362][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.363][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.366][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.366][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.367][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.374][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.377][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.378][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.380][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.381][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.383][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.384][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.386][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.395][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.396][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.398][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.404][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.411][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.411][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.414][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.414][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.417][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.514][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172860172, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, 3-butyl-5-phenyl-2H-1,3,4-oxadiazole, ...].
biodb.DEBUG[2025-03-15 16:02:56.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:56.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:56.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:56.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:56.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:56.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:56.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:56.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.711][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.712][private$selectFields]
biodb.TRACE[2025-03-15 16:02:56.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:56.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:56.714][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.715][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.716][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.718][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.719][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.721][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.722][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.724][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.725][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.731][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.731][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.734][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.743][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.744][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.746][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.746][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.749][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.758][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.759][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.761][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.762][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.764][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.765][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.770][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.771][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.774][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.776][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.777][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.782][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.783][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.786][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.788][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.795][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.798][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.810][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.810][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.811][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.813][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.814][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.816][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.817][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:56.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.819][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.819][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.820][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:56.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.824][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.825][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.827][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.828][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.830][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.831][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.834][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.836][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.837][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.838][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.842][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.846][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.850][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.851][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:56.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.866][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.867][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:56.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.869][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:56.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.873][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:56.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:56.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:56.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.979][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:56.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:56.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172858129, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-aminopropyl)cyclooctatetraenecarboxamide, N-(3-azanylpropyl)cyclooctatetraenecarboxamide, ...].
biodb.DEBUG[2025-03-15 16:02:57.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:57.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:57.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:57.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:57.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:57.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:57.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:57.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:57.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:57.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-03-15 16:02:57.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:57.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-03-15 16:02:57.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:57.075][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-03-15 16:02:57.076][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:57.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:57.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:57.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:57.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:57.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:57.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:57.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.202][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.203][private$selectFields]
biodb.TRACE[2025-03-15 16:02:57.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:57.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:57.205][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.206][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.209][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.210][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.212][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.213][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.216][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.217][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.220][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.222][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.223][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.225][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.226][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.235][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.235][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.240][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.244][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.246][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.250][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.251][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.253][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.254][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.256][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.257][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.260][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.263][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.264][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.266][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.267][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.269][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.270][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.272][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.273][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.276][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.277][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.288][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.289][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.292][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.304][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.304][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.305][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.308][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.308][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.311][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.312][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.314][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.315][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.315][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.320][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.322][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.323][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.325][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.326][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.331][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.332][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.337][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.340][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.343][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.344][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.347][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.353][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.359][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.360][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.363][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.363][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.366][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.462][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.465][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172860061, (1R)-1-amino-3-azido-1-(4-chlorophenyl)propan-1-ol, (1R)-1-amino-3-azido-1-(4-chlorophenyl)-1-propanol, (1R)-1-amino-3-azido-1-(4-chlorophenyl)propan-1-ol, (1R)-1-azanyl-3-azido-1-(4-chlorophenyl)propan-1-ol, ...].
biodb.DEBUG[2025-03-15 16:02:57.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:57.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:57.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:57.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:57.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:57.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:57.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.658][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.659][private$selectFields]
biodb.TRACE[2025-03-15 16:02:57.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:57.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:57.661][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.665][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.666][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.668][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.671][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.671][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.674][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.677][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.678][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.680][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.696][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.697][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.700][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.706][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.708][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.712][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.713][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.715][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.715][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.716][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.718][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.719][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.719][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.725][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.726][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.728][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.729][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.731][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.732][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.734][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.735][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.738][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.739][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.750][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.751][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.760][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.766][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.767][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.769][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.770][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.773][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.774][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:57.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.776][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.777][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:57.777][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.781][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.781][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.784][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.785][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.786][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.787][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.788][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.790][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.791][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.793][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.805][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.806][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.815][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.821][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.822][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.824][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.825][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.827][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.827][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:57.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:57.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:57.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:57.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:57.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172846412, 2-phenylthieno[3,2-c]pyridin-4-amine, 2-phenyl-4-thieno[3,2-c]pyridinamine, 2-phenylthieno[3,2-c]pyridin-4-amine, 2-phenylthieno[3,2-c]pyridin-4-amine, ...].
biodb.DEBUG[2025-03-15 16:02:57.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:58.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.115][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:58.116][private$selectFields]
biodb.TRACE[2025-03-15 16:02:58.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:58.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:58.118][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-03-15 16:02:58.119][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.122][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.123][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.125][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.126][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.128][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.129][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.131][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.132][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.134][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.135][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.136][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.147][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:58.147][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:58.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.153][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.156][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.166][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.167][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.169][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.170][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.176][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.177][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.179][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.180][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.182][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.186][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.188][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.189][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.190][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.200][ef$get] Asked field names are: logp.
biodb.TRACE[2025-03-15 16:02:58.201][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-03-15 16:02:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.209][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.224][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.225][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.227][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.228][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.230][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.231][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:02:58.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.233][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.234][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:58.235][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-03-15 16:02:58.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.239][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.239][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.242][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.242][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.245][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.248][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.249][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.251][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.252][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.263][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.276][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.277][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.279][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.282][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-03-15 16:02:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-03-15 16:02:58.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-03-15 16:02:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-03-15 16:02:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-15 16:02:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-15 16:02:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:58.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-03-15 16:02:58.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-03-15 16:02:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172846254, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-trifluoroacetic acid, 5-propyl-1,2,4-oxadiazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-03-15 16:02:58.431][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:58.432][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:58.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:58.446][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-15 16:02:58.447][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-03-15 16:02:58.448][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-03-15 16:02:58.449][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-15 16:02:58.449][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.450][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.452][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-15 16:02:58.456][biodb::testContext]
biodb.INFO [2025-03-15 16:02:58.456][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:58.457][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-03-15 16:02:58.458][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:02:58.459][biodb::testContext]
biodb.INFO [2025-03-15 16:02:58.460][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:58.462][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:58.465][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:58.466][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-15 16:02:58.467][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.469][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-15 16:02:58.470][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.480][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-15 16:02:58.481][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.485][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-15 16:02:58.485][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-15 16:02:58.486][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-15 16:02:58.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.489][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-15 16:02:58.490][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-15 16:02:58.491][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.493][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-15 16:02:58.494][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-15 16:02:58.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.497][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-15 16:02:58.497][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-15 16:02:58.498][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-15 16:02:58.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.501][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-15 16:02:58.502][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.505][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-15 16:02:58.505][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-15 16:02:58.506][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-15 16:02:58.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.509][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:58.510][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-15 16:02:58.511][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-15 16:02:58.511][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-15 16:02:58.512][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-15 16:02:58.513][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-15 16:02:58.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.516][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-15 16:02:58.517][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-15 16:02:58.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.520][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-15 16:02:58.521][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-15 16:02:58.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.524][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-15 16:02:58.524][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-15 16:02:58.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.527][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-15 16:02:58.528][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-15 16:02:58.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.531][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-15 16:02:58.532][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-15 16:02:58.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.535][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:02:58.536][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-15 16:02:58.556][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-15 16:02:58.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.559][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-15 16:02:58.560][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-15 16:02:58.560][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-15 16:02:58.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.564][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-15 16:02:58.565][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.566][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-15 16:02:58.567][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.567][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:58.568][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.569][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.570][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.570][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.571][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:58.572][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:58.573][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.574][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-15 16:02:58.574][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:58.575][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.576][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:58.577][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:58.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.580][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:58.581][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.581][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.582][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.583][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.584][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:58.584][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:58.585][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.586][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.586][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-15 16:02:58.588][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.589][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:58.590][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:58.591][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.592][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.593][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.594][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:58.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:58.596][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.597][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-15 16:02:58.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:58.598][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.599][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:02:58.600][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:58.601][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.603][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:58.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.605][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.606][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.606][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:58.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:58.608][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.608][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.609][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-15 16:02:58.611][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.612][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-15 16:02:58.612][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.613][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:58.614][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.615][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.615][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.616][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.617][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:02:58.618][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:58.619][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.619][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-15 16:02:58.620][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:58.621][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.622][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.623][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.623][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:58.624][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.625][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.626][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:58.626][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.627][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.628][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.629][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.629][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:58.630][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:58.631][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.632][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.632][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-15 16:02:58.634][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.634][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:02:58.635][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.636][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:58.637][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.638][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.639][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.640][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:02:58.641][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:58.641][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.642][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-15 16:02:58.643][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:58.644][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.644][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:58.645][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.646][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:02:58.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.648][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:58.649][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:58.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:58.651][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:58.651][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.652][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:58.653][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:58.653][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:58.654][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:58.655][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:58.656][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.716][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-15 16:02:58.717][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-15 16:02:58.718][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-15 16:02:58.719][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-15 16:02:58.720][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:02:58.721][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-15 16:02:58.722][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:58.723][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:58.724][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-15 16:02:58.725][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-15 16:02:58.726][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:02:58.727][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-15 16:02:58.728][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-15 16:02:58.730][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-15 16:02:58.731][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:58.732][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:58.733][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-15 16:02:58.734][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-15 16:02:58.735][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:02:58.736][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-15 16:02:58.737][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-15 16:02:58.738][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-15 16:02:58.739][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-15 16:02:58.740][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-15 16:02:58.906][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-15 16:02:58.908][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-15 16:02:58.909][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-15 16:02:58.910][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-15 16:02:58.911][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-15 16:02:58.912][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-15 16:02:58.913][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-15 16:02:58.914][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-15 16:02:58.915][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-15 16:02:58.916][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-15 16:02:58.917][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-15 16:02:58.918][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-15 16:02:58.919][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-15 16:02:58.920][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-15 16:02:58.921][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-15 16:02:58.922][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-15 16:02:58.923][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-15 16:02:58.924][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-15 16:02:58.925][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-15 16:02:58.926][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-15 16:02:58.927][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-15 16:02:58.928][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:58.929][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-15 16:02:58.930][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-15 16:02:58.931][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-15 16:02:58.932][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-15 16:02:58.933][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-15 16:02:58.934][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-15 16:02:58.935][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-15 16:02:58.936][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-15 16:02:58.937][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-15 16:02:58.938][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-15 16:02:58.939][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-15 16:02:58.940][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-15 16:02:58.941][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-15 16:02:58.942][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-15 16:02:58.943][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-15 16:02:58.944][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-15 16:02:58.945][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-15 16:02:58.946][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-15 16:02:58.947][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-15 16:02:58.948][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-15 16:02:58.949][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:02:58.950][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:02:58.951][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-15 16:02:58.952][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-15 16:02:58.953][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-15 16:02:58.954][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-15 16:02:58.955][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-15 16:02:58.956][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-15 16:02:58.957][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-15 16:02:58.958][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-15 16:02:58.959][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-15 16:02:58.960][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-15 16:02:58.961][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-15 16:02:58.962][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-15 16:02:58.963][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-15 16:02:58.964][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-15 16:02:58.965][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-15 16:02:58.966][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-15 16:02:58.967][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:02:58.968][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:02:58.969][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.970][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:58.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:58.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:58.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:58.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:58.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:58.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:02:59.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:59.052][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-03-15 16:02:59.054][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-03-15 16:02:59.055][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.056][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-03-15 16:02:59.057][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.058][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:59.058][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.059][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.060][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.061][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.062][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-03-15 16:02:59.063][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:59.063][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.064][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-03-15 16:02:59.065][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:59.066][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-03-15 16:02:59.066][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-03-15 16:02:59.067][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:59.067][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:59.068][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:59.069][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:59.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.074][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-03-15 16:02:59.074][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-03-15 16:02:59.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:59.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:59.076][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.077][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:59.077][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-03-15 16:02:59.079][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.079][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-03-15 16:02:59.080][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.081][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:59.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.083][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.085][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:59.086][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:59.086][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.087][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-03-15 16:02:59.088][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-03-15 16:02:59.089][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:59.090][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:59.091][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:02:59.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.093][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:59.094][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.095][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.096][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:59.096][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:59.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:59.097][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:59.098][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.099][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:59.100][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-03-15 16:02:59.101][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:59.102][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-03-15 16:02:59.103][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:59.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.105][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.106][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.106][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.107][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:59.108][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:59.108][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.109][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-03-15 16:02:59.110][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-03-15 16:02:59.112][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:59.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:02:59.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:02:59.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:02:59.113][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:59.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.115][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.115][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:59.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.118][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:59.118][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:59.118][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:59.119][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:59.119][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:59.120][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.121][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:59.122][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:02:59.123][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.124][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-03-15 16:02:59.125][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.125][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:02:59.126][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.127][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.128][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.128][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.129][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:02:59.130][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:02:59.130][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.131][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-03-15 16:02:59.132][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:02:59.133][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-03-15 16:02:59.133][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-03-15 16:02:59.134][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:02:59.135][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:02:59.135][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-03-15 16:02:59.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:02:59.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:02:59.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:02:59.140][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:02:59.141][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-03-15 16:02:59.141][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-03-15 16:02:59.141][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-03-15 16:02:59.141][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:02:59.142][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:02:59.143][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:02:59.144][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:59.145][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-03-15 16:02:59.146][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:02:59.147][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:02:59.148][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-03-15 16:02:59.150][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:02:59.151][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-03-15 16:02:59.160][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:02:59.161][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-03-15 16:02:59.162][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-03-15 16:02:59.163][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-03-15 16:02:59.164][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:59.165][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:59.166][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-03-15 16:02:59.167][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:59.167][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-03-15 16:02:59.168][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-03-15 16:02:59.172][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-03-15 16:02:59.175][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.176][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-15 16:02:59.176][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.177][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:59.179][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-03-15 16:02:59.180][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:59.182][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-03-15 16:02:59.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:59.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:59.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:59.234][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-03-15 16:02:59.236][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.337][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.348][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.356][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:59.364][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.364][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-15 16:02:59.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.366][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:59.367][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-03-15 16:02:59.368][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:59.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-03-15 16:02:59.371][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:59.373][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-03-15 16:02:59.374][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:59.375][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:59.376][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-03-15 16:02:59.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:59.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:59.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-15 16:02:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-03-15 16:02:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:59.436][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-03-15 16:02:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:02:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:02:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:02:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:59.451][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.452][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-15 16:02:59.453][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.454][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.459][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.460][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-15 16:02:59.460][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.461][biodb::testThat]
biodb.WARN [2025-03-15 16:02:59.464][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-03-15 16:02:59.467][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-03-15 16:02:59.474][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.475][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-15 16:02:59.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.476][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-03-15 16:02:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-03-15 16:02:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:02:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:02:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:02:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:59.531][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.532][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-15 16:02:59.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.534][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.541][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.541][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-15 16:02:59.542][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.543][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.550][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.551][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:59.551][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.552][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:59.555][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-03-15 16:02:59.661][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-03-15 16:02:59.755][biodb::testThat]
biodb.INFO [2025-03-15 16:02:59.756][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-15 16:02:59.757][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:59.757][biodb::testThat]
biodb.DEBUG[2025-03-15 16:02:59.880][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-03-15 16:02:59.962][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-15 16:02:59.963][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-03-15 16:02:59.964][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-03-15 16:02:59.965][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-15 16:02:59.966][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:59.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:59.967][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:59.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:59.968][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:59.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]
> 
> proc.time()
   user  system elapsed 
 35.738   1.751  70.041

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** this is package ‘biodbNcbi’ version ‘1.11.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)