Back to Workflows build report for BioC 3.21

This page was generated on 2025-03-18 16:30 -0400 (Tue, 18 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4740
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4543
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 29/30HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.31.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2025-03-18 12:45 -0400 (Tue, 18 Mar 2025)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: devel
git_last_commit: c327921
git_last_commit_date: 2024-10-29 10:02:54 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK  

INSTALL results for TCGAWorkflow on nebbiolo1

To the developers/maintainers of the TCGAWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAWorkflow
Version: 1.31.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL TCGAWorkflow
StartedAt: 2025-03-18 13:00:51 -0400 (Tue, 18 Mar 2025)
EndedAt: 2025-03-18 13:00:52 -0400 (Tue, 18 Mar 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL TCGAWorkflow
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
ERROR: dependency ‘rGADEM’ is not available for package ‘TCGAWorkflow’
Perhaps try a variation of:
install.packages('rGADEM')
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/TCGAWorkflow’