Back to Workflows build report for BioC 3.21

This page was generated on 2025-02-07 16:30 -0500 (Fri, 07 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4719
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4480
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 24/30HostnameOS / ArchINSTALLBUILD
seqpac 1.7.0  (landing page)
Daniel Natt
Snapshot Date: 2025-02-07 12:45 -0500 (Fri, 07 Feb 2025)
git_url: https://git.bioconductor.org/packages/seqpac
git_branch: devel
git_last_commit: 618f646
git_last_commit_date: 2024-10-29 10:03:34 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for seqpac on nebbiolo1

To the developers/maintainers of the seqpac package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: seqpac
Version: 1.7.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data seqpac
StartedAt: 2025-02-07 13:09:19 -0500 (Fri, 07 Feb 2025)
EndedAt: 2025-02-07 13:10:30 -0500 (Fri, 07 Feb 2025)
EllapsedTime: 71.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data seqpac
###
##############################################################################
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* checking for file ‘seqpac/DESCRIPTION’ ... OK
* preparing ‘seqpac’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’ using rmarkdown
# reads processed: 7902
# reads with at least one alignment: 7 (0.09%)
# reads that failed to align: 7895 (99.91%)
Reported 67 alignments

Quitting from lines 161-189 [unnamed-chunk-1] (seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd)
Error: processing vignette 'seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd' failed with diagnostics:
invalid 'scipen'
--- failed re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’

SUMMARY: processing the following file failed:
  ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’

Error: Vignette re-building failed.
Execution halted