| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1690/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| QuasR 1.50.0 (landing page) Michael Stadler
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for QuasR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the QuasR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/QuasR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: QuasR |
| Version: 1.50.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 QuasR |
| StartedAt: 2026-02-03 19:15:50 -0500 (Tue, 03 Feb 2026) |
| EndedAt: 2026-02-03 19:21:13 -0500 (Tue, 03 Feb 2026) |
| EllapsedTime: 323.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 QuasR
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* checking for file ‘QuasR/DESCRIPTION’ ... OK
* preparing ‘QuasR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QuasR.Rmd’ using rmarkdown
Quitting from QuasR.Rmd:520-523 [selectGenomeBSgenome]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Bioconductor version cannot be validated; no internet connection? See
#troubleshooting section in vignette
---
Backtrace:
▆
1. └─BSgenome::available.genomes()
2. └─BSgenome:::get_data_annotation_contrib_url(type)
3. ├─utils::contrib.url(BiocManager::repositories()["BioCann"], type = type)
4. └─BiocManager::repositories()
5. └─BiocManager:::.version_validate(version)
6. ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
7. └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'QuasR.Rmd' failed with diagnostics:
Bioconductor version cannot be validated; no internet connection? See
#troubleshooting section in vignette
--- failed re-building ‘QuasR.Rmd’
SUMMARY: processing the following file failed:
‘QuasR.Rmd’
Error: Vignette re-building failed.
Execution halted