| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1456/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| netprioR 1.36.0 (landing page) Fabian Schmich
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for netprioR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the netprioR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netprioR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: netprioR |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 netprioR |
| StartedAt: 2026-02-03 18:48:59 -0500 (Tue, 03 Feb 2026) |
| EndedAt: 2026-02-03 18:49:36 -0500 (Tue, 03 Feb 2026) |
| EllapsedTime: 37.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 netprioR
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* checking for file ‘netprioR/DESCRIPTION’ ... OK
* preparing ‘netprioR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘netprioR.Rmd’ using rmarkdown
Quitting from netprioR.Rmd:140-142 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::as_tibble()` instead.
---
Backtrace:
▆
1. ├─base::plot(np, which = "all")
2. ├─netprioR:::plot.netprioR(np, which = "all")
3. │ ├─ggplot2::ggplot(...)
4. │ ├─... %>% mutate(Network = factor(Network, levels = Network))
5. │ ├─stats::weights(x)
6. │ └─netprioR::weights(x)
7. │ └─netprioR (local) .local(object, ...)
8. │ └─... %>% arrange(desc(Weight))
9. ├─dplyr::mutate(., Network = factor(Network, levels = Network))
10. ├─dplyr::arrange(., desc(Weight))
11. ├─dplyr::mutate(., Weight = Weight/sum(Weight))
12. ├─dplyr::arrange(., desc(Weight))
13. └─dplyr::tbl_df(.)
14. └─lifecycle::deprecate_stop("1.0.0", "tbl_df()", "tibble::as_tibble()")
15. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'netprioR.Rmd' failed with diagnostics:
`tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::as_tibble()` instead.
--- failed re-building ‘netprioR.Rmd’
SUMMARY: processing the following file failed:
‘netprioR.Rmd’
Error: Vignette re-building failed.
Execution halted