| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2048/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| smartid 1.6.1 (landing page) Jinjin Chen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for smartid in R Universe. | ||||||||||||||
|
To the developers/maintainers of the smartid package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/smartid.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: smartid |
| Version: 1.6.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 smartid |
| StartedAt: 2026-02-03 19:57:07 -0500 (Tue, 03 Feb 2026) |
| EndedAt: 2026-02-03 19:57:52 -0500 (Tue, 03 Feb 2026) |
| EllapsedTime: 45.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 smartid
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* checking for file ‘smartid/DESCRIPTION’ ... OK
* preparing ‘smartid’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘smartid_Demo.Rmd’ using rmarkdown
Quitting from smartid_Demo.Rmd:191-201 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
---
Backtrace:
▆
1. └─smartid::sin_score_boxplot(...)
2. ├─ggplot2::ggplot(...)
3. ├─dplyr::mutate(...)
4. ├─tidyr::pivot_longer(...)
5. ├─stats::setNames(...)
6. └─dplyr::add_rownames(...)
7. └─lifecycle::deprecate_stop("1.0.0", "add_rownames()", "tibble::rownames_to_column()")
8. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smartid_Demo.Rmd' failed with diagnostics:
`add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
--- failed re-building ‘smartid_Demo.Rmd’
SUMMARY: processing the following file failed:
‘smartid_Demo.Rmd’
Error: Vignette re-building failed.
Execution halted