Back to Long Tests report for BioC 3.22

This page was generated on 2026-02-14 23:55 -0500 (Sat, 14 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4889
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4679
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2026-02-14 09:55 -0500 (Sat, 14 Feb 2026)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2026-02-14 16:01:08 -0500 (Sat, 14 Feb 2026)
EndedAt: 2026-02-14 16:02:16 -0500 (Sat, 14 Feb 2026)
EllapsedTime: 68.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
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Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2026-02-14 16:01:44.416][biodb::testContext]
biodb.INFO [2026-02-14 16:01:44.418][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-14 16:01:44.419][biodb::testContext] Test context - Generic long tests
biodb.INFO [2026-02-14 16:01:44.420][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-14 16:01:44.421][biodb::testContext]
biodb.INFO [2026-02-14 16:01:44.427][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2026-02-14 16:01:44.429][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2026-02-14 16:01:44.436][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:01:44.437][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2026-02-14 16:01:44.438][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.442][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2026-02-14 16:01:44.458][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.462][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2026-02-14 16:01:44.463][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.466][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2026-02-14 16:01:44.467][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2026-02-14 16:01:44.468][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2026-02-14 16:01:44.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.472][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2026-02-14 16:01:44.473][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2026-02-14 16:01:44.474][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.477][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2026-02-14 16:01:44.478][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2026-02-14 16:01:44.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.490][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2026-02-14 16:01:44.491][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2026-02-14 16:01:44.492][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2026-02-14 16:01:44.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.495][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2026-02-14 16:01:44.496][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.500][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2026-02-14 16:01:44.501][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2026-02-14 16:01:44.502][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2026-02-14 16:01:44.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.505][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2026-02-14 16:01:44.506][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2026-02-14 16:01:44.507][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2026-02-14 16:01:44.508][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2026-02-14 16:01:44.509][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2026-02-14 16:01:44.510][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2026-02-14 16:01:44.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.513][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2026-02-14 16:01:44.514][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2026-02-14 16:01:44.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.518][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2026-02-14 16:01:44.519][self$set] Set key entries.sep to "|".
biodb.DEBUG[2026-02-14 16:01:44.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.522][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2026-02-14 16:01:44.523][self$set] Set key offline to FALSE.
biodb.DEBUG[2026-02-14 16:01:44.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.526][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2026-02-14 16:01:44.527][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2026-02-14 16:01:44.528][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2026-02-14 16:01:44.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.531][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2026-02-14 16:01:44.532][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2026-02-14 16:01:44.536][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2026-02-14 16:01:44.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.539][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2026-02-14 16:01:44.540][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2026-02-14 16:01:44.541][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2026-02-14 16:01:44.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.547][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2026-02-14 16:01:44.577][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.592][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2026-02-14 16:01:44.593][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.594][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:01:44.595][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.596][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.596][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.597][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.598][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-14 16:01:44.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:01:44.600][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.601][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2026-02-14 16:01:44.602][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:01:44.603][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.604][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.605][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:01:44.605][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:01:44.605][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:01:44.605][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-14 16:01:44.605][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-14 16:01:44.606][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:01:44.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:01:44.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.611][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.612][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.613][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:01:44.614][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:01:44.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.615][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.616][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2026-02-14 16:01:44.618][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.619][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2026-02-14 16:01:44.620][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.621][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:01:44.622][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.623][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.624][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.625][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.625][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-14 16:01:44.626][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:01:44.627][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.628][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2026-02-14 16:01:44.629][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:01:44.630][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.631][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.632][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:01:44.632][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:01:44.632][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:01:44.632][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-14 16:01:44.632][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-14 16:01:44.633][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:01:44.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.635][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:01:44.636][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.637][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.638][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.639][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.640][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:01:44.641][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:01:44.642][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.642][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.644][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2026-02-14 16:01:44.645][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.651][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2026-02-14 16:01:44.652][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.653][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:01:44.653][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.654][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.655][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.656][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.657][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-14 16:01:44.658][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:01:44.659][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.660][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2026-02-14 16:01:44.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:01:44.662][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.663][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.664][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.665][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:01:44.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.667][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:01:44.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.670][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.671][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:01:44.672][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:01:44.673][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.674][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.675][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2026-02-14 16:01:44.677][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.678][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2026-02-14 16:01:44.679][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.680][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:01:44.681][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.682][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.683][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.684][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-14 16:01:44.685][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:01:44.686][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.687][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2026-02-14 16:01:44.688][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:01:44.689][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.690][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:44.691][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.692][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:01:44.693][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.694][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.694][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:01:44.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:44.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:44.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:01:44.698][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.699][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:01:44.700][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:01:44.701][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:44.701][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:01:44.705][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:01:44.706][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.774][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2026-02-14 16:01:44.778][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2026-02-14 16:01:44.780][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2026-02-14 16:01:44.781][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2026-02-14 16:01:44.782][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-14 16:01:44.784][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2026-02-14 16:01:44.785][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2026-02-14 16:01:44.794][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2026-02-14 16:01:44.795][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2026-02-14 16:01:44.797][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2026-02-14 16:01:44.799][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-14 16:01:44.800][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2026-02-14 16:01:44.802][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2026-02-14 16:01:44.803][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2026-02-14 16:01:44.805][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2026-02-14 16:01:44.806][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2026-02-14 16:01:44.807][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2026-02-14 16:01:44.809][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2026-02-14 16:01:44.810][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-14 16:01:44.812][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2026-02-14 16:01:44.813][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2026-02-14 16:01:44.815][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2026-02-14 16:01:44.816][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2026-02-14 16:01:44.818][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2026-02-14 16:01:44.819][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2026-02-14 16:01:44.839][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2026-02-14 16:01:44.841][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2026-02-14 16:01:44.842][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2026-02-14 16:01:44.844][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2026-02-14 16:01:44.845][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2026-02-14 16:01:44.847][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2026-02-14 16:01:44.848][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2026-02-14 16:01:44.850][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2026-02-14 16:01:44.851][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2026-02-14 16:01:44.853][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2026-02-14 16:01:44.854][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2026-02-14 16:01:44.856][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2026-02-14 16:01:44.857][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2026-02-14 16:01:44.859][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2026-02-14 16:01:44.860][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2026-02-14 16:01:44.862][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2026-02-14 16:01:44.863][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2026-02-14 16:01:44.864][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2026-02-14 16:01:44.866][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2026-02-14 16:01:44.867][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2026-02-14 16:01:44.869][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2026-02-14 16:01:44.870][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2026-02-14 16:01:44.872][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2026-02-14 16:01:44.873][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2026-02-14 16:01:44.874][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2026-02-14 16:01:44.876][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2026-02-14 16:01:44.877][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2026-02-14 16:01:44.879][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2026-02-14 16:01:44.880][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2026-02-14 16:01:44.881][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2026-02-14 16:01:44.883][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2026-02-14 16:01:44.884][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2026-02-14 16:01:44.886][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2026-02-14 16:01:44.887][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2026-02-14 16:01:44.888][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2026-02-14 16:01:44.890][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2026-02-14 16:01:44.891][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2026-02-14 16:01:44.893][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2026-02-14 16:01:44.894][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2026-02-14 16:01:44.895][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2026-02-14 16:01:44.897][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2026-02-14 16:01:44.898][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-14 16:01:44.900][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-14 16:01:44.901][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2026-02-14 16:01:44.902][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2026-02-14 16:01:44.904][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2026-02-14 16:01:44.905][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2026-02-14 16:01:44.907][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2026-02-14 16:01:44.908][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2026-02-14 16:01:44.909][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2026-02-14 16:01:44.911][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2026-02-14 16:01:44.912][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2026-02-14 16:01:44.914][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2026-02-14 16:01:44.915][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2026-02-14 16:01:44.916][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2026-02-14 16:01:44.918][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2026-02-14 16:01:44.919][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2026-02-14 16:01:44.921][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2026-02-14 16:01:44.927][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2026-02-14 16:01:44.929][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2026-02-14 16:01:44.932][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:01:44.933][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.935][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:44.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:44.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:44.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:44.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:44.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:44.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:44.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:01:45.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:01:45.041][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2026-02-14 16:01:45.050][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2026-02-14 16:01:45.052][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:45.053][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2026-02-14 16:01:45.054][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:45.055][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:01:45.056][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:45.057][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:01:45.057][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:45.058][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2026-02-14 16:01:45.059][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2026-02-14 16:01:45.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:01:45.061][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:45.062][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2026-02-14 16:01:45.063][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2026-02-14 16:01:45.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2026-02-14 16:01:45.065][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2026-02-14 16:01:45.066][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:01:45.066][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:01:45.066][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:01:45.067][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2026-02-14 16:01:45.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:45.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:45.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:01:45.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:01:45.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:01:45.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:01:45.073][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-14 16:01:45.073][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2026-02-14 16:01:45.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:01:45.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:01:45.076][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2026-02-14 16:01:45.077][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2026-02-14 16:01:45.077][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2026-02-14 16:01:45.082][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-14 16:01:45.084][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-14 16:01:45.085][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2026-02-14 16:01:45.086][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-14 16:01:45.088][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-14 16:01:45.089][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-14 16:01:45.111][super$initialize] Initialize connector chebi.
biodb.DEBUG[2026-02-14 16:01:45.125][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2026-02-14 16:01:45.133][biodb::testThat]
biodb.INFO [2026-02-14 16:01:45.134][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2026-02-14 16:01:45.135][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:01:45.136][biodb::testThat]
biodb.TRACE[2026-02-14 16:01:45.139][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2026-02-14 16:01:45.140][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:01:45.144][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:01:45.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:01:45.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:01:45.177][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.179][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.180][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.204][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.206][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.207][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.235][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.237][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.238][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.245][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.246][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.253][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.260][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.261][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.266][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:45.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.268][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.269][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.276][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.281][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.284][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.289][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:45.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.291][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.292][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.299][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.300][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:01:45.375][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2026-02-14 16:01:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.553][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.555][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.556][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.582][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:45.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.608][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.610][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.611][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.633][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.635][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.636][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.658][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.660][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.661][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.686][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.712][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.715][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.737][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.739][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.740][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.764][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.765][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.790][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.791][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.816][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.844][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.845][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.857][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.859][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.860][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.863][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:45.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.866][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.870][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:45.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:45.872][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.873][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:45.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.879][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:45.885][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.886][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.893][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.897][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:45.898][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.899][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.906][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:45.912][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.913][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.916][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:45.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:45.918][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.919][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:45.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.926][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.941][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2026-02-14 16:01:45.978][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:01:45.980][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:01:45.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:01:45.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:45.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:45.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:45.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:45.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:45.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:01:45.992][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.994][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.995][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.015][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.017][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.018][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.023][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.025][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.033][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.034][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.042][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.048][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.049][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.054][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.056][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.057][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.065][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.070][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.076][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.077][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.081][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:46.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.083][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.084][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.092][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:01:46.134][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2026-02-14 16:01:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.272][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.274][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.275][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.299][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.300][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.326][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.328][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.329][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.352][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.353][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.354][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.377][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.379][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.379][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.405][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.429][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.430][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.456][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.459][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.483][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.484][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.508][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.509][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.534][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.558][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.559][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.587][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.588][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.599][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.601][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.602][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.606][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.608][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.609][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.613][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.615][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.621][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.622][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.628][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.629][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.634][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.635][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.641][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.642][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.648][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.652][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.653][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.655][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.659][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.661][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.661][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.666][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.667][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.668][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.672][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2026-02-14 16:01:46.673][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:01:46.674][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:01:46.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:01:46.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:46.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:46.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:46.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:46.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:46.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:01:46.686][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.688][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.697][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.699][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.700][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.705][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.707][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.708][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.715][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.715][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.722][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.723][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.731][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.736][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.737][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.738][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:01:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.745][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.746][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.751][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.753][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.754][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.759][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:46.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.760][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.761][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.762][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:01:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.768][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.769][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:01:46.811][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2026-02-14 16:01:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:01:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:01:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:01:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:01:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.920][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.921][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.922][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.950][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.951][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.976][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.977][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:46.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:46.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.001][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.002][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.026][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.027][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.051][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.052][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.081][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.104][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.106][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.129][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.130][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.131][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.154][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.156][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.157][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.179][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.182][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.197][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:01:47.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:01:47.198][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.199][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.203][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:01:47.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:01:47.205][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.206][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.210][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:01:47.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:01:47.212][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.213][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:01:47.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:01:47.218][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.219][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:01:47.225][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.226][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.230][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.231][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:01:47.232][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.232][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:01:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.239][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:01:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.246][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.249][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:01:47.251][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.252][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.256][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:01:47.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:01:47.258][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.259][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:01:47.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:01:47.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:01:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:01:47.265][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:01:47.272][biodb::testThat]
biodb.INFO [2026-02-14 16:01:47.273][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2026-02-14 16:01:47.274][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:01:47.274][biodb::testThat]
biodb.DEBUG[2026-02-14 16:01:47.276][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2026-02-14 16:01:47.278][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2026-02-14 16:01:47.282][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-14 16:01:47.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2026-02-14 16:01:47.284][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-14 16:01:47.285][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2026-02-14 16:01:47.286][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2026-02-14 16:01:47.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:01:47.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:47.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:47.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:47.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:47.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:47.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:01:47.301][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
fscache.INFO [2026-02-14 16:01:47.324][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2026-02-14 16:01:47.325][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:47.326][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:47.327][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:47.984][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:47.985][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:47.986][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:47.987][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:48.676][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:48.678][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:48.681][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:48.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:49.009][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:49.011][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:49.013][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:49.015][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:49.696][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:49.699][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:49.701][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:49.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:50.037][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:50.039][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:50.042][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:50.044][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:50.534][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:50.536][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:50.539][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:50.542][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:50.900][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:50.905][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:50.907][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:50.909][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:51.399][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:51.402][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:51.405][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:51.411][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:51.741][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:51.743][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:51.746][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:51.749][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:52.235][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:52.239][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:52.242][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:52.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:52.575][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:52.577][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:52.580][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:52.582][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:53.069][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:53.073][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:53.076][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:53.080][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:53.411][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:53.414][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:53.417][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:53.420][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:53.907][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:53.911][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:53.914][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:53.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:54.249][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:54.252][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:54.255][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:54.258][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:54.747][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:54.750][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:54.754][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:54.758][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:55.089][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:55.091][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:55.094][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:55.096][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:55.579][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:55.581][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:55.583][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:55.586][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:01:55.908][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:01:55.910][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:55.912][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:55.914][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:01:56.380][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
biodb.DEBUG[2026-02-14 16:01:56.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:01:56.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:01:56.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:01:56.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:01:56.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:01:56.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:01:56.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:01:56.458][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
fscache.INFO [2026-02-14 16:01:56.491][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2026-02-14 16:01:56.507][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:56.508][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:56.510][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:01:56.804][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:01:56.806][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:56.807][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:56.809][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:01:57.280][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:57.282][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:57.284][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:57.287][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:01:57.614][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:01:57.616][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:57.617][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:57.619][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:01:58.109][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:58.111][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:58.114][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:58.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:01:58.450][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:01:58.451][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:58.452][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:58.454][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:01:58.974][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:58.976][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:58.977][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:58.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:01:59.275][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:01:59.277][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:01:59.280][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:01:59.281][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:01:59.732][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:01:59.733][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:01:59.734][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:01:59.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:00.045][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:00.049][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:00.050][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:00.052][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:00.575][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:00.576][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:00.577][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:00.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:00.872][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:00.873][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:00.875][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:00.876][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:01.314][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:01.315][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:01.316][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:01.318][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:01.989][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:02.011][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:02.014][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:02.015][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:02.465][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:02.466][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:02.468][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:02.469][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:02.762][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:02.763][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:02.764][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:02.766][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:03.294][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:03.295][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:03.296][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:03.297][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:03.591][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:03.593][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:03.594][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:03.595][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:04.047][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:04.049][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:04.050][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:04.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:04.346][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:04.348][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:04.349][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:04.350][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:04.806][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
biodb.DEBUG[2026-02-14 16:02:04.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:04.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:02:04.819][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
fscache.INFO [2026-02-14 16:02:04.822][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2026-02-14 16:02:04.823][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:04.826][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:04.829][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:05.139][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:05.141][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:05.144][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:05.146][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:05.709][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:05.712][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:05.715][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:05.719][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:06.051][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:06.053][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:06.055][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:06.057][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:06.510][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:06.514][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:06.517][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:06.521][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:06.852][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:06.854][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:06.856][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:06.858][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:07.349][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:07.353][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:07.356][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:07.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:07.691][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:07.693][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:07.696][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:07.698][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:08.187][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:08.190][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:08.193][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:08.197][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:08.530][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:08.532][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:08.534][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:08.536][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:09.019][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:09.023][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:09.026][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:09.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:09.359][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:09.361][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:09.362][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:09.364][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:09.852][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:09.855][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:09.857][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:09.861][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:10.192][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:10.194][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:10.196][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:10.198][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:10.681][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:10.683][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:10.685][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:10.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:11.027][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:11.029][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:11.031][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:11.032][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:11.520][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:11.522][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:11.525][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:11.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:11.858][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:11.859][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:11.861][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:11.862][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:12.339][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:12.341][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:12.344][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:12.347][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:12.702][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:12.704][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:12.705][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:12.707][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:13.195][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
fscache.INFO [2026-02-14 16:02:13.199][cch$saveContents] Save 3 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-14 16:02:13.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2026-02-14 16:02:13.206][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2026-02-14 16:02:13.209][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2026-02-14 16:02:13.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:13.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:13.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:13.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:13.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:13.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:13.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:13.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:13.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:13.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:13.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:13.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:13.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:13.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:13.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:13.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:13.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:13.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:13.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:13.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:13.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:13.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:13.368][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2026-02-14 16:02:13.368][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:13.499][biodb::testThat]
biodb.INFO [2026-02-14 16:02:13.500][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2026-02-14 16:02:13.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:13.502][biodb::testThat]
biodb.TRACE[2026-02-14 16:02:13.505][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:13.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:13.507][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:13.508][ef$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:13.509][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:13.760][biodb::testThat]
biodb.INFO [2026-02-14 16:02:13.761][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2026-02-14 16:02:13.762][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:13.763][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:14.009][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.010][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2026-02-14 16:02:14.011][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:14.012][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:14.109][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.110][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2026-02-14 16:02:14.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:14.112][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.121][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.122][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2026-02-14 16:02:14.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:14.124][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.132][biodb::testThat]
biodb.INFO [2026-02-14 16:02:14.133][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2026-02-14 16:02:14.134][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:14.135][biodb::testThat]
biodb.DEBUG[2026-02-14 16:02:14.139][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2026-02-14 16:02:14.625][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2026-02-14 16:02:15.057][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.059][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2026-02-14 16:02:15.061][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.063][biodb::testThat]
biodb.TRACE[2026-02-14 16:02:15.095][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:15.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:15.098][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:15.099][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:15.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:15.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:15.103][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:15.104][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:02:15.106][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.107][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2026-02-14 16:02:15.108][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.109][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:15.218][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.219][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2026-02-14 16:02:15.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.221][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:15.273][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.275][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:15.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.276][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:15.316][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.317][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:15.318][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.319][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2026-02-14 16:02:15.358][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:15.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:15.360][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:15.361][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:15.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:15.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:15.364][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:15.365][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:02:15.366][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.367][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2026-02-14 16:02:15.368][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.369][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:15.410][biodb::testThat]
biodb.INFO [2026-02-14 16:02:15.411][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:15.412][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:15.413][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:15.452][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2026-02-14 16:02:15.453][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2026-02-14 16:02:15.454][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2026-02-14 16:02:15.455][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:15.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:15.456][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:15.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:15.458][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:15.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label)
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `any(vapply(entries, is.null, FUN.VALUE = TRUE))` to be FALSE.
Differences:
`actual`:   TRUE 
`expected`: FALSE

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `e` to inherit from "character".
Actual inheritance: "NULL"
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)