| Back to Workflows build report for BioC 3.22 |
This page was generated on 2026-03-24 16:30 -0400 (Tue, 24 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4687 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| annotation 1.34.0 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK |  | |||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the annotation package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: annotation |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annotation |
| StartedAt: 2026-03-24 13:04:41 -0400 (Tue, 24 Mar 2026) |
| EndedAt: 2026-03-24 13:10:28 -0400 (Tue, 24 Mar 2026) |
| EllapsedTime: 347.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annotation
###
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* checking for file ‘annotation/DESCRIPTION’ ... OK
* preparing ‘annotation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotating_Genomic_Ranges.Rmd’ using rmarkdown
--- finished re-building ‘Annotating_Genomic_Ranges.Rmd’
--- re-building ‘Annotation_Resources.Rmd’ using rmarkdown
Quitting from Annotation_Resources.Rmd:607-609 [unnamed-chunk-36]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
▆
1. ├─Organism.dplyr::src_organism(...)
2. │ ├─base::withCallingHandlers(...)
3. │ └─Organism.dplyr:::.add_view(con, org, org_schema)
4. │ ├─DBI::dbExecute(con, sql)
5. │ └─DBI::dbExecute(con, sql)
6. │ ├─DBI::dbSendStatement(conn, statement, ...)
7. │ └─DBI::dbSendStatement(conn, statement, ...)
8. │ ├─DBI::dbSendQuery(conn, statement, ...)
9. │ └─RSQLite::dbSendQuery(conn, statement, ...)
10. │ └─RSQLite (local) .local(conn, statement, ...)
11. │ ├─methods::new(...)
12. │ │ ├─methods::initialize(value, ...)
13. │ │ └─methods::initialize(value, ...)
14. │ └─RSQLite:::result_create(conn@ptr, statement)
15. └─base::.handleSimpleError(...)
16. └─Organism.dplyr (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics:
database or disk is full
--- failed re-building ‘Annotation_Resources.Rmd’
SUMMARY: processing the following file failed:
‘Annotation_Resources.Rmd’
Error: Vignette re-building failed.
Execution halted