| Back to Workflows build report for BioC 3.22 |
This page was generated on 2026-03-24 16:30 -0400 (Tue, 24 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4687 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 27/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
SOMS Maintainer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the spicyWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: spicyWorkflow |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow |
| StartedAt: 2026-03-24 13:15:11 -0400 (Tue, 24 Mar 2026) |
| EndedAt: 2026-03-24 13:16:53 -0400 (Tue, 24 Mar 2026) |
| EllapsedTime: 101.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
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* checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK
* preparing ‘spicyWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘spicyWorkflow.Rmd’ using rmarkdown
Quitting from spicyWorkflow.Rmd:142-157 [load images]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
0 remote errors, element index:
8 unevaluated and other errors
first remote error:
---
Backtrace:
▆
1. └─cytomapper::loadImages(...)
2. ├─BiocParallel::bplapply(...)
3. └─BiocParallel::bplapply(...)
4. └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
BiocParallel errors
0 remote errors, element index:
8 unevaluated and other errors
first remote error:
--- failed re-building ‘spicyWorkflow.Rmd’
SUMMARY: processing the following file failed:
‘spicyWorkflow.Rmd’
Error: Vignette re-building failed.
Execution halted