Build/check report for BioC 3.23 - BUILD results for ASURAT on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"	4857
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BUILD results for ASURAT on nebbiolo1

To the developers/maintainers of the ASURAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASURAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ASURAT

Version: 1.15.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT

StartedAt: 2026-02-05 16:15:16 -0500 (Thu, 05 Feb 2026)

EndedAt: 2026-02-05 16:26:08 -0500 (Thu, 05 Feb 2026)

EllapsedTime: 652.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT
###
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* checking for file ‘ASURAT/DESCRIPTION’ ... OK
* preparing ‘ASURAT’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ASURAT.Rmd’ using rmarkdown

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Quitting from ASURAT.Rmd:525-540 [unnamed-chunk-35]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on nebbiolo1 (pid 1724676) at 2026-02-05T16:26:07. Using package 'future' v1.69.0. Possible other reasons: bad binding access [in vapply(before, FUN = as.integer, FUN.VALUE = NA_integer_)] [future 'future_lapply-1' (8cc8f8ed5cf0796afcda4a902f950cb7-3); on 8cc8f8ed5cf0796afcda4a902f950cb7@nebbiolo1<1724676>]
---
Backtrace:
     ▆
  1. ├─Seurat::FindNeighbors(surt, reduction = "pca", dims = ds[[i]])
  2. └─Seurat:::FindNeighbors.Seurat(surt, reduction = "pca", dims = ds[[i]])
  3.   ├─Seurat::FindNeighbors(...)
  4.   └─Seurat:::FindNeighbors.default(...)
  5.     └─Seurat:::NNHelper(...)
  6.       ├─base::do.call(what = "AnnoyNN", args = args)
  7.       └─Seurat:::AnnoyNN(...)
  8.         └─Seurat:::AnnoySearch(...)
  9.           └─future.apply::future_lapply(...)
 10.             └─future.apply:::future_xapply(...)
 11.               └─base::tryCatch(...)
 12.                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.                   └─base (local) tryCatchOne(...)
 14.                     └─value[[3L]](cond)
 15.                       └─future.apply:::onError(e, futures = fs, debug = debug)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ASURAT.Rmd' failed with diagnostics:
Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on nebbiolo1 (pid 1724676) at 2026-02-05T16:26:07. Using package 'future' v1.69.0. Possible other reasons: bad binding access [in vapply(before, FUN = as.integer, FUN.VALUE = NA_integer_)] [future 'future_lapply-1' (8cc8f8ed5cf0796afcda4a902f950cb7-3); on 8cc8f8ed5cf0796afcda4a902f950cb7@nebbiolo1<1724676>]
--- failed re-building ‘ASURAT.Rmd’

SUMMARY: processing the following file failed:
  ‘ASURAT.Rmd’

Error: Vignette re-building failed.
Execution halted