Multiple platform build/check report for BioC 3.23 - BUILD results for AnnotationForge on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4957
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4686
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for AnnotationForge on kunpeng2

To the developers/maintainers of the AnnotationForge package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationForge.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: AnnotationForge

Version: 1.53.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge

StartedAt: 2026-04-16 22:23:11 -0000 (Thu, 16 Apr 2026)

EndedAt: 2026-04-16 22:26:42 -0000 (Thu, 16 Apr 2026)

EllapsedTime: 211.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
##############################################################################
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘makeProbePackage.Rmd’ using rmarkdown

See
  ‘/home/biocbuild/tmp/RtmpwwG00V/hgu95av2probe.Rcheck/00check.log’
for details.

Warning in if (!is.character(x)) x <- structure(as.character(x), names = names(x)) :
  closing unused connection 4 (/home/biocbuild/tmp/Rtmp2OEObX/Rinst37c0b31d29e4d8/AnnotationForge/extdata/HG-U95Av2_probe_tab.gz)
--- finished re-building ‘makeProbePackage.Rmd’

--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr

Quitting from MakingNewAnnotationPackages.Rnw:53-57 [Homo.sapiens]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'GenomicFeatures' could not be loaded
---
Backtrace:
    x
 1. \-base::library(Homo.sapiens)
 2.   \-base::.getRequiredPackages2(...)
 3.     \-base::library(...)
 4.       \-base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
package 'GenomicFeatures' could not be loaded
--- failed re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘SQLForge.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted