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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:DFplyr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings DFplyr_1.5.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/DFplyr.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DFplyr/DESCRIPTION’ ... OK
* this is package ‘DFplyr’ version ‘1.5.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DFplyr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in Rd file 'filter.DataFrame.Rd':
  ‘[dplyr:when_any]{when_any()}’ ‘[dplyr:when_all]{when_all()}’

Missing link(s) in Rd file 'filter.GroupedDataFrame.Rd':
  ‘[dplyr:when_any]{when_any()}’ ‘[dplyr:when_all]{when_all()}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘DFplyr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: filter.DataFrame
> ### Title: Keep or drop rows that match a condition
> ### Aliases: filter.DataFrame
> 
> ### ** Examples
> 
> # Filtering for one criterion
> filter(starwars, species == "Human")
# A tibble: 35 × 14
   name     height  mass hair_color skin_color eye_color birth_year sex   gender
   <chr>     <int> <dbl> <chr>      <chr>      <chr>          <dbl> <chr> <chr> 
 1 Luke Sk…    172    77 blond      fair       blue            19   male  mascu…
 2 Darth V…    202   136 none       white      yellow          41.9 male  mascu…
 3 Leia Or…    150    49 brown      light      brown           19   fema… femin…
 4 Owen La…    178   120 brown, gr… light      blue            52   male  mascu…
 5 Beru Wh…    165    75 brown      light      blue            47   fema… femin…
 6 Biggs D…    183    84 black      light      brown           24   male  mascu…
 7 Obi-Wan…    182    77 auburn, w… fair       blue-gray       57   male  mascu…
 8 Anakin …    188    84 blond      fair       blue            41.9 male  mascu…
 9 Wilhuff…    180    NA auburn, g… fair       blue            64   male  mascu…
10 Han Solo    180    80 brown      fair       brown           29   male  mascu…
# ℹ 25 more rows
# ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#   vehicles <list>, starships <list>
> 
> # Filtering for multiple criteria within a single logical expression
> filter(starwars, hair_color == "none" & eye_color == "black")
# A tibble: 9 × 14
  name      height  mass hair_color skin_color eye_color birth_year sex   gender
  <chr>      <int> <dbl> <chr>      <chr>      <chr>          <dbl> <chr> <chr> 
1 Nien Nunb    160    68 none       grey       black             NA male  mascu…
2 Gasgano      122    NA none       white, bl… black             NA male  mascu…
3 Kit Fisto    196    87 none       green      black             NA male  mascu…
4 Plo Koon     188    80 none       orange     black             22 male  mascu…
5 Lama Su      229    88 none       grey       black             NA male  mascu…
6 Taun We      213    NA none       grey       black             NA fema… femin…
7 Shaak Ti     178    57 none       red, blue… black             NA fema… femin…
8 Tion Med…    206    80 none       grey       black             NA male  mascu…
9 BB8           NA    NA none       none       black             NA none  mascu…
# ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#   vehicles <list>, starships <list>
> filter(starwars, hair_color == "none" | eye_color == "black")
# A tibble: 39 × 14
   name     height  mass hair_color skin_color eye_color birth_year sex   gender
   <chr>     <int> <dbl> <chr>      <chr>      <chr>          <dbl> <chr> <chr> 
 1 Darth V…    202   136 none       white      yellow          41.9 male  mascu…
 2 Greedo      173    74 <NA>       green      black           44   male  mascu…
 3 IG-88       200   140 none       metal      red             15   none  mascu…
 4 Bossk       190   113 none       green      red             53   male  mascu…
 5 Lobot       175    79 none       light      blue            37   male  mascu…
 6 Ackbar      180    83 none       brown mot… orange          41   male  mascu…
 7 Nien Nu…    160    68 none       grey       black           NA   male  mascu…
 8 Nute Gu…    191    90 none       mottled g… red             NA   male  mascu…
 9 Jar Jar…    196    66 none       orange     orange          52   male  mascu…
10 Roos Ta…    224    82 none       grey       orange          NA   male  mascu…
# ℹ 29 more rows
# ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#   vehicles <list>, starships <list>
> 
> # Multiple comma separated expressions are combined using `&`
> starwars |> filter(hair_color == "none", eye_color == "black")
# A tibble: 9 × 14
  name      height  mass hair_color skin_color eye_color birth_year sex   gender
  <chr>      <int> <dbl> <chr>      <chr>      <chr>          <dbl> <chr> <chr> 
1 Nien Nunb    160    68 none       grey       black             NA male  mascu…
2 Gasgano      122    NA none       white, bl… black             NA male  mascu…
3 Kit Fisto    196    87 none       green      black             NA male  mascu…
4 Plo Koon     188    80 none       orange     black             22 male  mascu…
5 Lama Su      229    88 none       grey       black             NA male  mascu…
6 Taun We      213    NA none       grey       black             NA fema… femin…
7 Shaak Ti     178    57 none       red, blue… black             NA fema… femin…
8 Tion Med…    206    80 none       grey       black             NA male  mascu…
9 BB8           NA    NA none       none       black             NA none  mascu…
# ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#   vehicles <list>, starships <list>
> 
> # To combine comma separated expressions using `|` instead, use `when_any()`
> starwars |> filter(when_any(hair_color == "none", eye_color == "black"))
Error in `filter()`:
ℹ In argument: `when_any(hair_color == "none", eye_color == "black")`.
Caused by error in `when_any()`:
! could not find function "when_any"
Backtrace:
     ▆
  1. ├─dplyr::filter(...)
  2. ├─dplyr:::filter.data.frame(starwars, when_any(hair_color == "none", eye_color == "black"))
  3. │ └─dplyr:::filter_rows(.data, dots, by)
  4. │   └─dplyr:::filter_eval(...)
  5. │     ├─base::withCallingHandlers(...)
  6. │     └─mask$eval_all_filter(dots, env_filter)
  7. │       └─dplyr (local) eval()
  8. └─base::.handleSimpleError(...)
  9.   └─dplyr (local) h(simpleError(msg, call))
 10.     └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/DFplyr.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL DFplyr
###
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* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘DFplyr’ ...
** this is package ‘DFplyr’ version ‘1.5.2’
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DFplyr)

R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(DFplyr)
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'DFplyr'

The following object is masked from 'package:dplyr':

    desc

> 
> test_check("DFplyr")
Joining with `by = join_by(name, eye_color)`
Joining with `by = join_by(name, eye_color)`
Joining with `by = join_by(name, eye_color)`
Joining with `by = join_by(name, eye_color)`
Joining with `by = c("name", "eye_color")`
Joining with `by = c("name", "eye_color")`
Joining with `by = c("name", "eye_color")`
Joining with `by = c("name", "eye_color")`
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 135 ]
> 
> proc.time()
   user  system elapsed 
 16.837   0.361  17.233