PMP S.A. R Support
| Snapshot Date: 2026-01-20 13:40 -0500 (Tue, 20 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/GladiaTOX |
| git_branch: devel |
| git_last_commit: ab512db |
| git_last_commit_date: 2025-10-29 10:52:17 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-21 11:35 -0500 (Wed, 21 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4805 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 889/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GladiaTOX 1.27.0 (landing page) PMP S.A. R Support
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the GladiaTOX package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GladiaTOX.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GladiaTOX |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GladiaTOX |
| StartedAt: 2026-01-20 16:28:40 -0500 (Tue, 20 Jan 2026) |
| EndedAt: 2026-01-20 16:28:49 -0500 (Tue, 20 Jan 2026) |
| EllapsedTime: 9.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GladiaTOX
###
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* checking for file ‘GladiaTOX/DESCRIPTION’ ... OK
* preparing ‘GladiaTOX’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GladiaTOX.Rmd’ using rmarkdown
2026-01-20 16:28:46.546 R[23587:784396254] XType: Using static font registry.
Quitting from GladiaTOX.Rmd:252-255 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `which()`:
! argument to 'which' is not logical
---
Backtrace:
▆
1. └─GladiaTOX::gtoxRun(asid = asid, slvl = 1, elvl = 3, mc.cores = 2)
2. └─GladiaTOX:::.multProc(id = id, lvl = 1L, type = "mc", ncores = ncores)
3. ├─base::message(...)
4. │ └─base::.makeMessage(..., domain = domain, appendLF = appendLF)
5. │ └─base::lapply(list(...), as.character)
6. └─GladiaTOX::lw(sapply(tmp, "[[", 1))
7. └─base::which(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GladiaTOX.Rmd' failed with diagnostics:
argument to 'which' is not logical
--- failed re-building ‘GladiaTOX.Rmd’
SUMMARY: processing the following file failed:
‘GladiaTOX.Rmd’
Error: Vignette re-building failed.
Execution halted