| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-06 11:35 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4989 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4722 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-06 00:59:33 -0400 (Wed, 06 May 2026) |
| EndedAt: 2026-05-06 01:14:37 -0400 (Wed, 06 May 2026) |
| EllapsedTime: 904.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-06 04:59:33 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 33.841 0.459 34.371
var_imp 33.584 0.685 34.295
corr_plot 33.627 0.474 34.177
pred_ensembel 12.802 0.237 11.718
enrichfindP 0.557 0.038 9.869
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 96.359717
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.891695
iter 10 value 94.483943
iter 20 value 94.470201
final value 94.461538
converged
Fitting Repeat 3
# weights: 103
initial value 95.393113
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.636177
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.042006
iter 10 value 92.636535
iter 20 value 92.635858
final value 92.635856
converged
Fitting Repeat 1
# weights: 305
initial value 112.635355
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 122.903636
iter 10 value 92.390616
iter 20 value 86.511771
iter 30 value 86.401210
final value 86.401202
converged
Fitting Repeat 3
# weights: 305
initial value 117.806850
iter 10 value 94.315790
iter 10 value 94.315790
iter 10 value 94.315790
final value 94.315790
converged
Fitting Repeat 4
# weights: 305
initial value 112.054061
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 120.173976
iter 10 value 93.724683
iter 10 value 93.724683
iter 10 value 93.724683
final value 93.724683
converged
Fitting Repeat 1
# weights: 507
initial value 100.217998
iter 10 value 93.778444
iter 20 value 93.707014
final value 93.707007
converged
Fitting Repeat 2
# weights: 507
initial value 100.546995
iter 10 value 87.626690
iter 20 value 85.318880
iter 30 value 85.216176
iter 40 value 85.188324
final value 85.188212
converged
Fitting Repeat 3
# weights: 507
initial value 96.507476
iter 10 value 89.932865
iter 20 value 82.647558
iter 30 value 82.085198
iter 40 value 81.710102
iter 50 value 81.702941
final value 81.702930
converged
Fitting Repeat 4
# weights: 507
initial value 98.382682
iter 10 value 91.511713
iter 10 value 91.511713
final value 91.511688
converged
Fitting Repeat 5
# weights: 507
initial value 118.932790
iter 10 value 94.485306
iter 20 value 94.484212
iter 20 value 94.484211
iter 20 value 94.484211
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 105.130541
iter 10 value 94.486863
iter 20 value 94.121505
iter 30 value 92.981233
iter 40 value 92.969037
iter 50 value 92.207436
iter 60 value 85.165842
iter 70 value 84.416568
iter 80 value 83.589557
iter 90 value 82.412196
iter 100 value 82.074806
final value 82.074806
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.128959
iter 10 value 94.488032
iter 20 value 93.926973
iter 30 value 92.544710
iter 40 value 92.074733
iter 50 value 91.848705
iter 60 value 86.064279
iter 70 value 84.070844
iter 80 value 83.715477
iter 90 value 81.727146
iter 100 value 81.181676
final value 81.181676
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.192823
iter 10 value 93.670164
iter 20 value 88.515071
iter 30 value 88.076186
iter 40 value 87.625829
iter 50 value 84.037126
iter 60 value 83.389263
iter 70 value 82.356996
iter 80 value 82.248216
iter 90 value 82.245641
iter 90 value 82.245641
iter 90 value 82.245641
final value 82.245641
converged
Fitting Repeat 4
# weights: 103
initial value 96.701625
iter 10 value 94.479298
iter 20 value 91.660462
iter 30 value 88.977750
iter 40 value 88.566535
iter 50 value 85.565134
iter 60 value 84.130842
iter 70 value 83.464179
iter 80 value 83.340907
final value 83.336569
converged
Fitting Repeat 5
# weights: 103
initial value 99.496227
iter 10 value 94.647060
iter 20 value 93.203280
iter 30 value 93.178364
iter 40 value 90.992396
iter 50 value 84.174831
iter 60 value 82.245353
iter 70 value 81.480847
iter 80 value 81.377204
iter 90 value 81.131910
final value 81.058154
converged
Fitting Repeat 1
# weights: 305
initial value 101.205711
iter 10 value 94.593869
iter 20 value 93.013320
iter 30 value 90.072856
iter 40 value 88.129125
iter 50 value 85.132048
iter 60 value 83.364214
iter 70 value 83.043627
iter 80 value 80.737201
iter 90 value 80.282086
iter 100 value 80.098946
final value 80.098946
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.996677
iter 10 value 93.674265
iter 20 value 92.727584
iter 30 value 88.928273
iter 40 value 86.780309
iter 50 value 85.037405
iter 60 value 83.353563
iter 70 value 82.365739
iter 80 value 81.261811
iter 90 value 80.925892
iter 100 value 80.356432
final value 80.356432
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.411951
iter 10 value 92.774282
iter 20 value 88.873435
iter 30 value 86.970122
iter 40 value 84.405064
iter 50 value 82.862160
iter 60 value 82.522293
iter 70 value 81.557367
iter 80 value 80.443356
iter 90 value 79.853717
iter 100 value 79.721568
final value 79.721568
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.368998
iter 10 value 93.723065
iter 20 value 88.623323
iter 30 value 86.169139
iter 40 value 85.501895
iter 50 value 84.223659
iter 60 value 80.928267
iter 70 value 80.215087
iter 80 value 79.624135
iter 90 value 79.408550
iter 100 value 79.328039
final value 79.328039
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.342081
iter 10 value 94.422155
iter 20 value 85.839363
iter 30 value 84.889785
iter 40 value 84.150382
iter 50 value 83.523305
iter 60 value 82.976574
iter 70 value 82.475418
iter 80 value 81.081698
iter 90 value 80.192512
iter 100 value 79.898979
final value 79.898979
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 122.493361
iter 10 value 95.055944
iter 20 value 86.587468
iter 30 value 84.502941
iter 40 value 83.733695
iter 50 value 82.529164
iter 60 value 82.246559
iter 70 value 82.194967
iter 80 value 82.118092
iter 90 value 81.585357
iter 100 value 80.233213
final value 80.233213
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.365096
iter 10 value 94.778259
iter 20 value 94.466882
iter 30 value 93.121948
iter 40 value 92.938367
iter 50 value 87.878343
iter 60 value 84.301585
iter 70 value 82.265162
iter 80 value 81.746431
iter 90 value 80.379053
iter 100 value 80.021410
final value 80.021410
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.706622
iter 10 value 94.585634
iter 20 value 93.117690
iter 30 value 92.898384
iter 40 value 85.831909
iter 50 value 81.018174
iter 60 value 80.211960
iter 70 value 79.950785
iter 80 value 79.577386
iter 90 value 79.406620
iter 100 value 79.174582
final value 79.174582
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.926189
iter 10 value 94.470362
iter 20 value 89.047071
iter 30 value 85.662672
iter 40 value 84.276685
iter 50 value 83.952695
iter 60 value 83.503639
iter 70 value 81.395945
iter 80 value 80.030082
iter 90 value 79.620306
iter 100 value 79.549243
final value 79.549243
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.233085
iter 10 value 88.180525
iter 20 value 85.531721
iter 30 value 83.675015
iter 40 value 82.413561
iter 50 value 81.728258
iter 60 value 81.635022
iter 70 value 81.359450
iter 80 value 80.834270
iter 90 value 80.630263
iter 100 value 80.525092
final value 80.525092
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.609074
final value 94.486104
converged
Fitting Repeat 2
# weights: 103
initial value 97.405672
final value 94.485741
converged
Fitting Repeat 3
# weights: 103
initial value 105.168146
iter 10 value 92.932527
iter 20 value 92.930122
iter 30 value 85.847035
iter 40 value 85.241763
iter 50 value 85.190166
final value 85.189557
converged
Fitting Repeat 4
# weights: 103
initial value 94.632412
iter 10 value 94.485722
iter 20 value 94.411195
final value 94.026849
converged
Fitting Repeat 5
# weights: 103
initial value 102.965673
final value 94.485778
converged
Fitting Repeat 1
# weights: 305
initial value 99.411172
iter 10 value 94.489056
iter 20 value 94.207320
iter 30 value 88.566163
iter 40 value 88.560213
iter 50 value 88.442996
iter 60 value 83.695182
iter 70 value 83.161786
iter 80 value 83.158468
iter 90 value 83.157368
iter 100 value 82.904032
final value 82.904032
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.673501
iter 10 value 93.846144
iter 20 value 92.643027
iter 30 value 92.638260
iter 40 value 92.636624
iter 50 value 87.622204
iter 60 value 87.547149
iter 70 value 83.700133
iter 80 value 83.444471
iter 90 value 82.996414
iter 100 value 82.893305
final value 82.893305
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.240922
iter 10 value 94.487232
iter 20 value 94.416327
iter 30 value 87.564744
iter 40 value 86.717622
iter 50 value 84.220840
final value 84.220803
converged
Fitting Repeat 4
# weights: 305
initial value 98.626252
iter 10 value 94.489229
iter 20 value 94.484753
iter 30 value 94.105095
iter 40 value 87.192650
iter 50 value 84.107042
iter 60 value 83.303009
iter 70 value 81.972746
final value 81.835096
converged
Fitting Repeat 5
# weights: 305
initial value 124.481965
iter 10 value 94.489278
iter 20 value 94.483816
iter 30 value 88.014051
iter 40 value 87.099172
iter 50 value 82.281957
iter 60 value 82.199751
iter 70 value 81.820004
iter 80 value 81.505848
iter 90 value 81.258344
iter 100 value 81.256954
final value 81.256954
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 100.442913
iter 10 value 93.999758
iter 20 value 93.358497
iter 30 value 92.637998
iter 40 value 92.636863
iter 50 value 92.543631
iter 60 value 86.557819
iter 70 value 84.131112
iter 80 value 84.125808
iter 90 value 84.124935
iter 100 value 83.855716
final value 83.855716
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.148256
iter 10 value 94.033943
iter 20 value 93.496863
iter 30 value 91.604704
iter 40 value 85.769032
iter 50 value 85.733915
iter 60 value 85.659960
iter 70 value 85.041702
iter 80 value 85.021286
iter 90 value 85.016732
iter 100 value 83.223384
final value 83.223384
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.729037
iter 10 value 94.494298
iter 20 value 94.448585
iter 30 value 86.008412
iter 40 value 83.511107
iter 50 value 83.311419
iter 60 value 83.279551
iter 70 value 83.275623
iter 80 value 83.164229
iter 90 value 83.052196
final value 83.048144
converged
Fitting Repeat 4
# weights: 507
initial value 95.676516
iter 10 value 94.492718
iter 20 value 94.101008
iter 30 value 85.863988
iter 40 value 81.237826
iter 50 value 80.733431
iter 60 value 80.676175
iter 70 value 80.675927
iter 80 value 80.514333
iter 90 value 80.511383
iter 100 value 80.127079
final value 80.127079
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.941095
iter 10 value 94.469776
iter 20 value 92.845609
iter 30 value 92.840235
final value 92.089758
converged
Fitting Repeat 1
# weights: 103
initial value 102.260297
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.489839
final value 94.052911
converged
Fitting Repeat 3
# weights: 103
initial value 95.624350
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 97.240128
iter 10 value 93.328261
iter 10 value 93.328261
iter 10 value 93.328261
final value 93.328261
converged
Fitting Repeat 5
# weights: 103
initial value 96.398389
iter 10 value 93.070039
final value 93.014053
converged
Fitting Repeat 1
# weights: 305
initial value 94.888824
iter 10 value 81.108308
iter 20 value 80.732389
iter 30 value 80.659432
final value 80.659269
converged
Fitting Repeat 2
# weights: 305
initial value 97.241621
iter 10 value 93.714288
final value 93.714286
converged
Fitting Repeat 3
# weights: 305
initial value 95.725165
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 105.579071
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 105.275251
iter 10 value 85.675584
iter 20 value 85.510013
iter 30 value 85.507049
iter 40 value 85.506553
final value 85.506548
converged
Fitting Repeat 1
# weights: 507
initial value 111.333979
iter 10 value 93.111130
final value 93.111023
converged
Fitting Repeat 2
# weights: 507
initial value 111.536594
iter 10 value 93.328262
final value 93.328261
converged
Fitting Repeat 3
# weights: 507
initial value 102.615129
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 96.928231
iter 10 value 91.762792
iter 20 value 91.543412
final value 91.543410
converged
Fitting Repeat 5
# weights: 507
initial value 102.245256
iter 10 value 93.328265
final value 93.328261
converged
Fitting Repeat 1
# weights: 103
initial value 101.645074
iter 10 value 93.890605
iter 20 value 90.190659
iter 30 value 89.559611
iter 40 value 83.719247
iter 50 value 83.321892
iter 60 value 83.208142
iter 70 value 82.967847
iter 80 value 82.929785
final value 82.927978
converged
Fitting Repeat 2
# weights: 103
initial value 96.958717
iter 10 value 93.535247
iter 20 value 92.573865
iter 30 value 89.288919
iter 40 value 84.380887
iter 50 value 83.282344
iter 60 value 82.768741
iter 70 value 81.196344
iter 80 value 79.250571
final value 79.246018
converged
Fitting Repeat 3
# weights: 103
initial value 101.570941
iter 10 value 94.055653
iter 20 value 93.624304
iter 30 value 93.242389
iter 40 value 93.234378
iter 50 value 93.231023
iter 60 value 83.415971
iter 70 value 80.205155
iter 80 value 80.126870
iter 90 value 80.073240
iter 100 value 79.432054
final value 79.432054
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 105.750674
iter 10 value 94.056163
iter 20 value 94.055023
iter 30 value 93.551867
iter 40 value 93.424805
iter 50 value 93.232063
final value 93.230213
converged
Fitting Repeat 5
# weights: 103
initial value 105.348448
iter 10 value 93.894504
iter 20 value 87.187601
iter 30 value 84.652258
iter 40 value 84.514107
iter 50 value 83.698219
iter 60 value 83.239795
iter 70 value 83.106933
iter 80 value 82.937508
iter 90 value 82.928017
final value 82.927977
converged
Fitting Repeat 1
# weights: 305
initial value 103.714163
iter 10 value 93.482769
iter 20 value 86.336122
iter 30 value 82.244596
iter 40 value 80.749233
iter 50 value 79.258505
iter 60 value 78.935672
iter 70 value 78.930706
iter 80 value 78.878010
iter 90 value 78.720041
iter 100 value 78.374211
final value 78.374211
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.162607
iter 10 value 94.006780
iter 20 value 88.177913
iter 30 value 82.357379
iter 40 value 80.398574
iter 50 value 78.763936
iter 60 value 78.566338
iter 70 value 78.148093
iter 80 value 78.051190
iter 90 value 77.808856
iter 100 value 77.709916
final value 77.709916
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.292617
iter 10 value 94.127214
iter 20 value 93.000119
iter 30 value 92.320544
iter 40 value 88.849564
iter 50 value 82.690592
iter 60 value 81.667430
iter 70 value 81.186688
iter 80 value 81.155563
iter 90 value 80.955032
iter 100 value 80.157435
final value 80.157435
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.193782
iter 10 value 93.629554
iter 20 value 90.860379
iter 30 value 90.421081
iter 40 value 89.601043
iter 50 value 86.021999
iter 60 value 80.102478
iter 70 value 79.768306
iter 80 value 79.694097
iter 90 value 79.388365
iter 100 value 79.369105
final value 79.369105
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.026599
iter 10 value 93.289379
iter 20 value 83.467758
iter 30 value 82.919188
iter 40 value 82.667074
iter 50 value 82.628541
iter 60 value 82.264554
iter 70 value 81.610092
iter 80 value 79.731045
iter 90 value 79.104321
iter 100 value 79.021086
final value 79.021086
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.445688
iter 10 value 88.409437
iter 20 value 83.635448
iter 30 value 79.847108
iter 40 value 79.304451
iter 50 value 78.949282
iter 60 value 78.841244
iter 70 value 78.773846
iter 80 value 78.594032
iter 90 value 78.164526
iter 100 value 78.052260
final value 78.052260
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.027193
iter 10 value 93.390133
iter 20 value 91.208556
iter 30 value 89.267721
iter 40 value 88.834763
iter 50 value 86.494843
iter 60 value 84.911751
iter 70 value 84.123425
iter 80 value 81.606645
iter 90 value 80.146514
iter 100 value 79.075665
final value 79.075665
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.730708
iter 10 value 94.313180
iter 20 value 93.865617
iter 30 value 93.522150
iter 40 value 89.538006
iter 50 value 82.064420
iter 60 value 80.925246
iter 70 value 80.296918
iter 80 value 79.696830
iter 90 value 79.447482
iter 100 value 79.056396
final value 79.056396
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.557631
iter 10 value 93.105719
iter 20 value 84.122935
iter 30 value 82.218086
iter 40 value 81.559904
iter 50 value 80.241069
iter 60 value 79.767546
iter 70 value 79.136774
iter 80 value 78.526877
iter 90 value 78.206466
iter 100 value 78.105199
final value 78.105199
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.272692
iter 10 value 93.571641
iter 20 value 91.266222
iter 30 value 85.305584
iter 40 value 82.828828
iter 50 value 81.878374
iter 60 value 80.531928
iter 70 value 79.819438
iter 80 value 79.388492
iter 90 value 78.797388
iter 100 value 78.585849
final value 78.585849
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.218836
final value 94.054661
converged
Fitting Repeat 2
# weights: 103
initial value 108.023288
final value 94.055298
converged
Fitting Repeat 3
# weights: 103
initial value 96.636242
final value 94.054507
converged
Fitting Repeat 4
# weights: 103
initial value 95.810000
iter 10 value 93.412502
iter 20 value 93.312178
final value 93.185261
converged
Fitting Repeat 5
# weights: 103
initial value 96.051965
iter 10 value 93.330581
iter 20 value 93.330202
iter 30 value 93.270040
iter 40 value 93.129753
iter 50 value 83.279897
iter 60 value 82.968513
iter 70 value 82.012235
iter 80 value 81.690607
iter 90 value 81.690396
final value 81.689013
converged
Fitting Repeat 1
# weights: 305
initial value 97.387192
iter 10 value 94.055521
iter 20 value 93.433014
iter 30 value 93.330435
iter 40 value 93.328645
iter 50 value 85.476281
iter 60 value 80.901596
iter 70 value 80.637893
final value 80.634826
converged
Fitting Repeat 2
# weights: 305
initial value 97.740649
iter 10 value 94.056616
iter 20 value 93.987683
iter 30 value 91.456651
iter 40 value 88.681869
iter 50 value 88.636716
iter 60 value 88.153166
iter 70 value 85.856389
iter 80 value 81.872352
iter 90 value 81.703859
iter 100 value 81.703144
final value 81.703144
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.797713
iter 10 value 94.040618
iter 20 value 94.013351
iter 30 value 94.009375
iter 40 value 84.930057
iter 50 value 84.876421
iter 60 value 83.672182
iter 70 value 83.589050
iter 80 value 82.336370
iter 90 value 80.549186
iter 100 value 80.338970
final value 80.338970
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.488473
iter 10 value 83.646474
iter 20 value 83.260270
iter 30 value 83.258381
iter 40 value 83.256059
iter 50 value 83.199218
final value 83.198227
converged
Fitting Repeat 5
# weights: 305
initial value 104.684618
iter 10 value 93.333512
iter 20 value 93.330971
iter 30 value 90.650816
iter 40 value 81.605293
iter 50 value 81.512931
iter 60 value 81.503491
iter 70 value 81.494477
iter 80 value 81.487613
final value 81.487430
converged
Fitting Repeat 1
# weights: 507
initial value 96.298184
iter 10 value 85.697283
iter 20 value 85.515637
iter 30 value 85.301103
iter 40 value 84.812391
iter 50 value 84.812239
final value 84.812230
converged
Fitting Repeat 2
# weights: 507
initial value 99.118277
iter 10 value 93.436315
iter 20 value 93.099617
iter 30 value 93.089428
iter 40 value 93.018216
iter 50 value 93.015560
iter 60 value 85.815569
iter 70 value 80.634895
final value 80.634580
converged
Fitting Repeat 3
# weights: 507
initial value 102.577472
iter 10 value 93.337088
iter 20 value 93.334403
iter 30 value 93.259450
iter 40 value 83.301984
final value 83.246829
converged
Fitting Repeat 4
# weights: 507
initial value 121.772243
iter 10 value 85.577643
iter 20 value 85.521695
iter 30 value 85.460807
iter 40 value 84.988391
iter 50 value 79.206028
iter 60 value 78.559398
iter 70 value 78.495648
iter 80 value 78.441199
iter 90 value 78.434254
iter 100 value 78.351921
final value 78.351921
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.438115
iter 10 value 94.019442
iter 20 value 93.662262
iter 30 value 93.424752
iter 40 value 93.417791
iter 50 value 93.413553
iter 60 value 93.277919
iter 70 value 93.269530
iter 80 value 93.268517
iter 90 value 93.162385
iter 100 value 93.054156
final value 93.054156
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.014134
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.869894
iter 10 value 93.274501
iter 20 value 93.271106
final value 93.271095
converged
Fitting Repeat 3
# weights: 103
initial value 96.780998
iter 10 value 86.540548
iter 20 value 86.080032
final value 86.079546
converged
Fitting Repeat 4
# weights: 103
initial value 94.513495
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 93.123051
iter 10 value 86.862830
iter 20 value 86.590273
final value 86.590137
converged
Fitting Repeat 1
# weights: 305
initial value 101.036463
iter 10 value 93.539502
iter 10 value 93.539501
final value 93.539501
converged
Fitting Repeat 2
# weights: 305
initial value 113.416196
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 112.802111
iter 10 value 94.047619
iter 10 value 94.047619
iter 10 value 94.047619
final value 94.047619
converged
Fitting Repeat 4
# weights: 305
initial value 103.845225
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 105.996484
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.371848
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 101.048259
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 101.889631
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 114.627225
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 107.505110
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 103.518415
iter 10 value 94.071579
iter 20 value 89.661992
iter 30 value 87.138488
iter 40 value 86.285097
iter 50 value 85.538273
iter 60 value 85.245280
iter 70 value 85.091075
final value 85.087383
converged
Fitting Repeat 2
# weights: 103
initial value 97.488056
iter 10 value 94.056470
iter 20 value 94.050230
iter 30 value 89.891219
iter 40 value 86.677834
iter 50 value 86.400598
iter 60 value 84.536141
iter 70 value 84.397415
iter 80 value 84.171519
iter 90 value 84.063831
iter 100 value 83.779477
final value 83.779477
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 95.921915
iter 10 value 94.118319
iter 20 value 93.173753
iter 30 value 93.075815
iter 40 value 92.922879
iter 50 value 92.327234
iter 60 value 91.882289
iter 70 value 87.155125
iter 80 value 84.186637
iter 90 value 83.897480
iter 100 value 83.687201
final value 83.687201
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.506888
iter 10 value 93.982007
iter 20 value 93.043510
iter 30 value 88.726892
iter 40 value 88.140259
iter 50 value 85.457490
iter 60 value 85.195677
iter 70 value 84.734257
iter 80 value 84.646543
iter 90 value 84.639166
final value 84.637417
converged
Fitting Repeat 5
# weights: 103
initial value 101.695533
iter 10 value 93.948882
iter 20 value 92.879843
iter 30 value 91.738577
iter 40 value 91.409740
iter 50 value 88.178280
iter 60 value 85.341419
iter 70 value 85.018200
iter 80 value 84.842278
final value 84.842211
converged
Fitting Repeat 1
# weights: 305
initial value 99.256294
iter 10 value 94.062110
iter 20 value 93.909716
iter 30 value 88.323093
iter 40 value 87.366216
iter 50 value 86.852099
iter 60 value 84.601435
iter 70 value 81.729851
iter 80 value 81.372009
iter 90 value 81.220584
iter 100 value 81.066863
final value 81.066863
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.598300
iter 10 value 94.109595
iter 20 value 90.675721
iter 30 value 88.618901
iter 40 value 87.139041
iter 50 value 86.518275
iter 60 value 85.074742
iter 70 value 84.746015
iter 80 value 84.562926
iter 90 value 83.440379
iter 100 value 81.806176
final value 81.806176
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.632889
iter 10 value 94.288793
iter 20 value 94.084996
iter 30 value 92.771127
iter 40 value 87.602751
iter 50 value 85.558646
iter 60 value 85.164329
iter 70 value 83.040717
iter 80 value 81.784224
iter 90 value 81.291319
iter 100 value 81.205424
final value 81.205424
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.336393
iter 10 value 94.039631
iter 20 value 91.462904
iter 30 value 88.619385
iter 40 value 87.025435
iter 50 value 85.596621
iter 60 value 83.383909
iter 70 value 82.121813
iter 80 value 82.067475
iter 90 value 81.835863
iter 100 value 81.044157
final value 81.044157
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.443986
iter 10 value 93.299477
iter 20 value 88.464677
iter 30 value 86.831964
iter 40 value 85.585458
iter 50 value 84.347278
iter 60 value 84.229090
iter 70 value 83.919888
iter 80 value 83.881436
iter 90 value 83.780401
iter 100 value 83.180995
final value 83.180995
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.637904
iter 10 value 94.089510
iter 20 value 88.526381
iter 30 value 85.253594
iter 40 value 84.821258
iter 50 value 83.549949
iter 60 value 82.227190
iter 70 value 81.668774
iter 80 value 81.066992
iter 90 value 80.927847
iter 100 value 80.766810
final value 80.766810
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.266593
iter 10 value 94.043265
iter 20 value 93.296577
iter 30 value 91.917341
iter 40 value 88.444982
iter 50 value 85.655090
iter 60 value 85.029871
iter 70 value 84.540546
iter 80 value 83.008981
iter 90 value 82.673782
iter 100 value 81.987614
final value 81.987614
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.552142
iter 10 value 94.049141
iter 20 value 91.146080
iter 30 value 87.624632
iter 40 value 86.127441
iter 50 value 85.226598
iter 60 value 85.048854
iter 70 value 83.790607
iter 80 value 83.433649
iter 90 value 83.384998
iter 100 value 83.317478
final value 83.317478
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.872755
iter 10 value 93.579492
iter 20 value 87.388628
iter 30 value 86.447914
iter 40 value 85.601594
iter 50 value 84.892592
iter 60 value 84.111558
iter 70 value 83.249027
iter 80 value 82.540148
iter 90 value 81.510683
iter 100 value 81.276281
final value 81.276281
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.193979
iter 10 value 93.034310
iter 20 value 87.868126
iter 30 value 85.852896
iter 40 value 83.491325
iter 50 value 82.348580
iter 60 value 81.979934
iter 70 value 81.544313
iter 80 value 81.296300
iter 90 value 81.231547
iter 100 value 81.225162
final value 81.225162
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.490954
final value 94.054485
converged
Fitting Repeat 2
# weights: 103
initial value 105.305503
final value 94.054702
converged
Fitting Repeat 3
# weights: 103
initial value 98.571655
final value 94.054496
converged
Fitting Repeat 4
# weights: 103
initial value 95.450919
final value 94.054735
converged
Fitting Repeat 5
# weights: 103
initial value 98.427929
final value 94.049255
converged
Fitting Repeat 1
# weights: 305
initial value 107.665484
iter 10 value 94.101685
iter 20 value 94.038850
iter 30 value 93.421656
iter 40 value 89.089374
iter 50 value 85.335286
iter 60 value 85.212156
iter 70 value 85.089140
iter 80 value 85.088309
iter 80 value 85.088309
final value 85.088309
converged
Fitting Repeat 2
# weights: 305
initial value 103.240486
iter 10 value 94.037747
iter 20 value 93.829800
iter 30 value 92.282338
iter 40 value 92.276054
iter 50 value 92.256924
final value 92.248002
converged
Fitting Repeat 3
# weights: 305
initial value 94.437279
iter 10 value 87.947225
iter 20 value 86.582690
iter 30 value 86.580307
iter 40 value 85.613519
iter 50 value 84.168375
iter 60 value 80.589762
iter 70 value 79.383528
iter 80 value 79.187004
iter 90 value 79.186869
final value 79.186382
converged
Fitting Repeat 4
# weights: 305
initial value 99.634775
iter 10 value 94.058744
iter 20 value 92.270978
iter 30 value 91.602562
iter 40 value 87.330292
iter 50 value 83.902074
iter 60 value 82.286778
iter 70 value 81.970886
iter 80 value 81.970623
iter 90 value 81.965050
iter 100 value 81.920861
final value 81.920861
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.984722
iter 10 value 94.057821
iter 20 value 93.396385
iter 30 value 87.788634
iter 40 value 85.414356
iter 50 value 84.934452
iter 60 value 84.025953
iter 70 value 83.802286
iter 80 value 83.219029
iter 90 value 83.177301
iter 100 value 83.076628
final value 83.076628
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.889788
iter 10 value 92.130871
iter 20 value 88.788836
iter 30 value 87.661690
iter 40 value 86.047521
iter 50 value 86.019453
iter 60 value 86.016220
iter 70 value 85.994699
iter 80 value 85.985916
iter 90 value 85.984599
iter 100 value 85.983985
final value 85.983985
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 94.322460
iter 10 value 94.042145
iter 20 value 94.024837
iter 30 value 94.017157
iter 40 value 85.786254
iter 50 value 85.116345
iter 60 value 85.091335
iter 70 value 85.091280
final value 85.090655
converged
Fitting Repeat 3
# weights: 507
initial value 96.854687
iter 10 value 94.060509
final value 94.053782
converged
Fitting Repeat 4
# weights: 507
initial value 109.542428
iter 10 value 93.743823
iter 20 value 91.131676
iter 30 value 86.470039
final value 86.383166
converged
Fitting Repeat 5
# weights: 507
initial value 108.834433
iter 10 value 94.007943
iter 20 value 94.001699
iter 30 value 92.545233
iter 40 value 87.213160
iter 50 value 86.490827
iter 60 value 86.261878
iter 70 value 86.214982
final value 86.213759
converged
Fitting Repeat 1
# weights: 103
initial value 105.388560
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 110.144297
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 106.847927
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.235492
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.558070
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.138509
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.062850
final value 94.291892
converged
Fitting Repeat 3
# weights: 305
initial value 110.485465
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.092582
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 107.445034
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.538812
final value 94.291892
converged
Fitting Repeat 2
# weights: 507
initial value 108.625637
final value 94.291892
converged
Fitting Repeat 3
# weights: 507
initial value 99.620104
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 125.848338
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 102.199094
iter 10 value 94.291909
final value 94.291892
converged
Fitting Repeat 1
# weights: 103
initial value 109.976060
iter 10 value 94.549212
iter 20 value 94.485898
iter 30 value 94.459512
iter 40 value 93.817715
iter 50 value 93.666847
iter 60 value 85.256967
iter 70 value 83.472069
iter 80 value 82.771993
iter 90 value 82.591614
iter 100 value 82.439294
final value 82.439294
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.388150
iter 10 value 94.485181
iter 20 value 91.899844
iter 30 value 91.573648
iter 40 value 91.549407
iter 50 value 90.985362
iter 60 value 90.911787
iter 70 value 90.897233
final value 90.897229
converged
Fitting Repeat 3
# weights: 103
initial value 105.432457
iter 10 value 94.494703
iter 20 value 94.458057
iter 30 value 94.352690
iter 40 value 94.277581
iter 50 value 88.102100
iter 60 value 86.480076
iter 70 value 83.582099
iter 80 value 83.091101
iter 90 value 82.862203
iter 100 value 82.768315
final value 82.768315
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 110.158862
iter 10 value 94.398873
iter 20 value 87.277576
iter 30 value 86.575475
iter 40 value 83.740170
iter 50 value 83.561807
iter 60 value 83.348247
iter 70 value 83.127994
iter 80 value 82.891935
iter 90 value 82.444260
iter 100 value 82.409401
final value 82.409401
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.369549
iter 10 value 88.861097
iter 20 value 85.223007
iter 30 value 85.075213
iter 40 value 83.441544
iter 50 value 82.621757
iter 60 value 82.410679
iter 70 value 82.409266
iter 70 value 82.409266
iter 70 value 82.409266
final value 82.409266
converged
Fitting Repeat 1
# weights: 305
initial value 100.907290
iter 10 value 90.743444
iter 20 value 86.474581
iter 30 value 84.959470
iter 40 value 84.786516
iter 50 value 84.678930
iter 60 value 83.970753
iter 70 value 82.841933
iter 80 value 81.073958
iter 90 value 80.080162
iter 100 value 79.668312
final value 79.668312
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.697679
iter 10 value 94.483402
iter 20 value 94.371013
iter 30 value 93.527419
iter 40 value 86.687735
iter 50 value 81.933773
iter 60 value 81.649997
iter 70 value 81.451105
iter 80 value 81.171162
iter 90 value 80.763584
iter 100 value 79.604084
final value 79.604084
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 130.966541
iter 10 value 94.677513
iter 20 value 93.619854
iter 30 value 87.718418
iter 40 value 84.435368
iter 50 value 84.012962
iter 60 value 83.975965
iter 70 value 83.582743
iter 80 value 81.882568
iter 90 value 80.629757
iter 100 value 79.872572
final value 79.872572
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.494098
iter 10 value 93.971348
iter 20 value 91.895524
iter 30 value 83.496033
iter 40 value 81.696132
iter 50 value 80.084128
iter 60 value 79.849814
iter 70 value 79.480146
iter 80 value 79.200889
iter 90 value 78.996606
iter 100 value 78.900351
final value 78.900351
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.221576
iter 10 value 93.891790
iter 20 value 88.904683
iter 30 value 87.443750
iter 40 value 84.430964
iter 50 value 82.834143
iter 60 value 80.519725
iter 70 value 80.264025
iter 80 value 79.986973
iter 90 value 79.542832
iter 100 value 79.321895
final value 79.321895
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.992145
iter 10 value 95.093768
iter 20 value 93.364572
iter 30 value 87.678540
iter 40 value 85.262335
iter 50 value 82.537851
iter 60 value 81.056899
iter 70 value 80.196674
iter 80 value 79.766339
iter 90 value 79.688986
iter 100 value 79.476983
final value 79.476983
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.992349
iter 10 value 94.343692
iter 20 value 89.825647
iter 30 value 86.470868
iter 40 value 85.668649
iter 50 value 84.929298
iter 60 value 84.442140
iter 70 value 81.323959
iter 80 value 79.825166
iter 90 value 79.610303
iter 100 value 79.241954
final value 79.241954
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.775134
iter 10 value 94.625275
iter 20 value 94.494329
iter 30 value 91.957225
iter 40 value 88.471017
iter 50 value 85.409690
iter 60 value 82.273980
iter 70 value 81.746207
iter 80 value 81.558210
iter 90 value 81.416422
iter 100 value 81.349484
final value 81.349484
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.015445
iter 10 value 94.298372
iter 20 value 87.893706
iter 30 value 84.797388
iter 40 value 81.425457
iter 50 value 80.653941
iter 60 value 80.234411
iter 70 value 79.693691
iter 80 value 79.342985
iter 90 value 79.234636
iter 100 value 79.181294
final value 79.181294
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 140.680320
iter 10 value 92.830646
iter 20 value 89.477057
iter 30 value 85.657434
iter 40 value 85.061815
iter 50 value 84.687932
iter 60 value 84.306475
iter 70 value 83.796207
iter 80 value 81.536517
iter 90 value 80.938874
iter 100 value 80.087599
final value 80.087599
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.527617
iter 10 value 94.484421
iter 20 value 93.968632
iter 30 value 93.509657
iter 40 value 93.509483
iter 50 value 93.508700
final value 93.508661
converged
Fitting Repeat 2
# weights: 103
initial value 95.524082
final value 94.485997
converged
Fitting Repeat 3
# weights: 103
initial value 97.123957
iter 10 value 94.293832
iter 20 value 93.965088
iter 30 value 85.659876
iter 40 value 85.654149
iter 50 value 84.837360
final value 84.764532
converged
Fitting Repeat 4
# weights: 103
initial value 110.599633
final value 94.485776
converged
Fitting Repeat 5
# weights: 103
initial value 100.903341
final value 94.485920
converged
Fitting Repeat 1
# weights: 305
initial value 103.671441
iter 10 value 94.592739
iter 20 value 92.508393
iter 30 value 92.507227
iter 40 value 92.463929
iter 50 value 92.462759
iter 60 value 92.460358
final value 92.459618
converged
Fitting Repeat 2
# weights: 305
initial value 96.508769
iter 10 value 94.334140
iter 20 value 94.315814
iter 30 value 87.505303
iter 40 value 85.778489
iter 50 value 85.484548
iter 60 value 85.471845
iter 70 value 85.390049
iter 80 value 84.897014
iter 90 value 84.776136
iter 100 value 84.760534
final value 84.760534
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.137642
iter 10 value 94.386655
iter 20 value 94.384781
final value 94.382840
converged
Fitting Repeat 4
# weights: 305
initial value 104.277503
iter 10 value 94.488988
iter 20 value 94.401564
iter 30 value 87.553080
iter 40 value 83.669077
iter 50 value 82.224381
iter 60 value 81.220702
iter 70 value 81.214069
iter 80 value 81.208745
iter 90 value 81.159882
iter 100 value 81.152852
final value 81.152852
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.201739
iter 10 value 94.297301
iter 20 value 94.293039
iter 30 value 92.709914
iter 40 value 91.952771
iter 50 value 91.663103
iter 60 value 91.364806
iter 60 value 91.364805
iter 60 value 91.364805
final value 91.364805
converged
Fitting Repeat 1
# weights: 507
initial value 101.199267
iter 10 value 94.300166
iter 20 value 94.296566
iter 30 value 94.294972
iter 40 value 94.292203
iter 50 value 92.818063
iter 60 value 82.629134
iter 70 value 82.626880
iter 80 value 82.304966
iter 90 value 82.265585
iter 90 value 82.265585
iter 90 value 82.265585
final value 82.265585
converged
Fitting Repeat 2
# weights: 507
initial value 96.559363
iter 10 value 87.750002
iter 20 value 87.319381
iter 30 value 87.313016
iter 40 value 87.312663
iter 50 value 87.288277
iter 60 value 87.286777
iter 70 value 87.286201
iter 80 value 87.218086
iter 90 value 83.883757
iter 100 value 82.849810
final value 82.849810
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.567618
iter 10 value 94.493546
iter 20 value 94.456118
iter 30 value 85.975728
iter 40 value 85.964442
iter 50 value 85.953335
iter 60 value 85.927558
iter 70 value 85.925909
final value 85.925644
converged
Fitting Repeat 4
# weights: 507
initial value 97.352422
iter 10 value 92.483274
iter 20 value 90.800710
iter 30 value 90.709678
iter 40 value 90.703090
iter 50 value 90.560400
iter 60 value 90.418083
iter 70 value 90.414679
final value 90.411958
converged
Fitting Repeat 5
# weights: 507
initial value 101.872299
iter 10 value 94.488803
iter 20 value 94.487259
iter 30 value 85.394719
iter 40 value 83.316189
iter 50 value 83.191844
final value 83.191397
converged
Fitting Repeat 1
# weights: 103
initial value 94.825192
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.830550
final value 94.483810
converged
Fitting Repeat 3
# weights: 103
initial value 99.270438
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 122.614909
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 111.101752
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.266740
iter 10 value 94.379772
final value 94.344733
converged
Fitting Repeat 2
# weights: 305
initial value 100.298334
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 119.562979
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 104.057160
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.496266
iter 10 value 88.929290
iter 20 value 85.881016
iter 30 value 84.966592
final value 84.960590
converged
Fitting Repeat 1
# weights: 507
initial value 104.178771
final value 94.052434
converged
Fitting Repeat 2
# weights: 507
initial value 113.739589
iter 10 value 93.889165
iter 20 value 93.245886
iter 30 value 92.326931
iter 40 value 88.330356
iter 50 value 88.151705
iter 60 value 88.146961
iter 70 value 88.146920
iter 70 value 88.146919
iter 70 value 88.146919
final value 88.146919
converged
Fitting Repeat 3
# weights: 507
initial value 115.956310
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 131.232492
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.291812
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 96.916366
iter 10 value 94.398730
iter 20 value 90.116039
iter 30 value 88.114336
iter 40 value 84.052704
iter 50 value 83.075699
iter 60 value 82.514679
iter 70 value 82.251912
iter 80 value 82.152255
iter 90 value 82.087580
final value 82.087519
converged
Fitting Repeat 2
# weights: 103
initial value 102.628737
iter 10 value 94.478879
iter 20 value 88.765001
iter 30 value 87.870523
iter 40 value 86.982908
iter 50 value 86.357729
iter 60 value 86.207600
iter 70 value 86.195967
iter 80 value 86.158323
final value 86.157554
converged
Fitting Repeat 3
# weights: 103
initial value 98.069490
iter 10 value 94.531639
iter 20 value 90.544746
iter 30 value 87.601574
iter 40 value 87.185398
iter 50 value 84.830002
iter 60 value 84.754874
iter 70 value 83.440673
iter 80 value 82.230139
iter 90 value 82.088571
iter 100 value 82.087519
final value 82.087519
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 108.188460
iter 10 value 94.470102
iter 20 value 93.572940
iter 30 value 88.786245
iter 40 value 88.024784
iter 50 value 87.296185
iter 60 value 87.089668
iter 70 value 87.071408
iter 80 value 86.368107
iter 90 value 85.723404
final value 85.722505
converged
Fitting Repeat 5
# weights: 103
initial value 98.703745
iter 10 value 94.490609
iter 20 value 93.886492
iter 30 value 88.076072
iter 40 value 87.739299
iter 50 value 87.549570
iter 60 value 86.567531
iter 70 value 86.151880
iter 80 value 86.013664
iter 90 value 85.583978
iter 100 value 82.455872
final value 82.455872
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.725991
iter 10 value 94.599492
iter 20 value 94.490241
iter 30 value 93.734903
iter 40 value 93.585648
iter 50 value 89.231489
iter 60 value 88.155964
iter 70 value 85.075764
iter 80 value 83.984268
iter 90 value 83.490454
iter 100 value 83.417126
final value 83.417126
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.746628
iter 10 value 94.908593
iter 20 value 89.813048
iter 30 value 85.625725
iter 40 value 82.864546
iter 50 value 82.592688
iter 60 value 82.454705
iter 70 value 82.244074
iter 80 value 82.006235
iter 90 value 81.744612
iter 100 value 81.522880
final value 81.522880
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.526387
iter 10 value 94.429891
iter 20 value 89.039700
iter 30 value 88.413845
iter 40 value 88.076783
iter 50 value 84.857316
iter 60 value 82.066476
iter 70 value 81.631496
iter 80 value 81.577424
iter 90 value 81.539979
iter 100 value 81.506055
final value 81.506055
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.616562
iter 10 value 94.585117
iter 20 value 89.911519
iter 30 value 85.922817
iter 40 value 85.056778
iter 50 value 83.678044
iter 60 value 82.100548
iter 70 value 81.846719
iter 80 value 81.521452
iter 90 value 81.265708
iter 100 value 81.001204
final value 81.001204
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.386803
iter 10 value 94.499100
iter 20 value 90.557795
iter 30 value 89.274352
iter 40 value 89.171732
iter 50 value 88.637367
iter 60 value 87.037221
iter 70 value 83.978649
iter 80 value 83.355884
iter 90 value 82.559768
iter 100 value 82.076189
final value 82.076189
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.281366
iter 10 value 94.168311
iter 20 value 93.595114
iter 30 value 85.423141
iter 40 value 82.842267
iter 50 value 82.087789
iter 60 value 81.099241
iter 70 value 80.741175
iter 80 value 80.662656
iter 90 value 80.617713
iter 100 value 80.448316
final value 80.448316
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.440265
iter 10 value 96.685973
iter 20 value 95.559132
iter 30 value 88.245720
iter 40 value 83.635738
iter 50 value 81.629560
iter 60 value 81.503332
iter 70 value 80.934121
iter 80 value 80.478430
iter 90 value 80.249928
iter 100 value 80.195517
final value 80.195517
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.888132
iter 10 value 95.099160
iter 20 value 93.783074
iter 30 value 93.392069
iter 40 value 88.595377
iter 50 value 86.502462
iter 60 value 83.725266
iter 70 value 82.908195
iter 80 value 82.084168
iter 90 value 81.990998
iter 100 value 81.955559
final value 81.955559
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.272319
iter 10 value 94.027249
iter 20 value 88.284238
iter 30 value 87.006536
iter 40 value 86.593129
iter 50 value 85.307085
iter 60 value 82.584287
iter 70 value 81.947081
iter 80 value 81.722817
iter 90 value 81.270816
iter 100 value 81.082954
final value 81.082954
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.681276
iter 10 value 94.519493
iter 20 value 93.940934
iter 30 value 90.082080
iter 40 value 88.578180
iter 50 value 87.117680
iter 60 value 86.798859
iter 70 value 86.224110
iter 80 value 83.597571
iter 90 value 82.347792
iter 100 value 81.112600
final value 81.112600
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.852189
final value 94.485918
converged
Fitting Repeat 2
# weights: 103
initial value 97.730391
final value 94.485803
converged
Fitting Repeat 3
# weights: 103
initial value 93.200567
iter 10 value 85.933892
iter 20 value 85.821395
iter 30 value 85.816822
iter 40 value 85.815906
iter 50 value 85.565870
iter 60 value 85.153632
iter 70 value 84.966614
iter 80 value 84.965559
iter 90 value 84.505181
final value 84.481117
converged
Fitting Repeat 4
# weights: 103
initial value 99.665339
final value 94.485989
converged
Fitting Repeat 5
# weights: 103
initial value 119.173793
final value 94.485849
converged
Fitting Repeat 1
# weights: 305
initial value 95.980479
iter 10 value 94.489055
iter 20 value 94.484236
final value 94.484221
converged
Fitting Repeat 2
# weights: 305
initial value 95.599555
iter 10 value 94.489453
iter 20 value 94.484574
iter 30 value 94.484497
final value 94.484301
converged
Fitting Repeat 3
# weights: 305
initial value 102.261099
iter 10 value 91.760398
iter 20 value 91.126103
iter 30 value 89.405427
iter 40 value 86.367449
iter 50 value 86.114907
iter 60 value 85.919982
iter 70 value 85.784272
final value 85.784252
converged
Fitting Repeat 4
# weights: 305
initial value 98.653593
iter 10 value 94.489366
iter 20 value 94.484426
iter 30 value 93.692418
iter 40 value 87.928319
final value 87.923531
converged
Fitting Repeat 5
# weights: 305
initial value 110.887578
iter 10 value 94.359974
iter 20 value 93.988430
iter 30 value 93.912417
final value 93.912312
converged
Fitting Repeat 1
# weights: 507
initial value 98.386998
iter 10 value 94.491959
iter 20 value 93.033450
iter 30 value 86.340840
iter 40 value 86.203648
iter 50 value 85.848691
iter 60 value 84.151584
iter 70 value 81.199167
iter 80 value 79.979297
iter 90 value 79.945501
iter 100 value 79.943169
final value 79.943169
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.263293
iter 10 value 94.491829
iter 20 value 93.806400
final value 93.660522
converged
Fitting Repeat 3
# weights: 507
initial value 107.239237
iter 10 value 94.492171
iter 20 value 94.338038
iter 30 value 93.913183
iter 40 value 93.642038
iter 50 value 92.226292
iter 60 value 89.334619
iter 70 value 88.267249
iter 80 value 87.523812
iter 90 value 87.521209
iter 100 value 87.239991
final value 87.239991
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 98.653580
iter 10 value 94.153353
iter 20 value 94.003506
iter 30 value 93.816980
iter 40 value 88.389602
iter 50 value 87.243810
iter 60 value 87.234405
iter 70 value 87.234268
iter 70 value 87.234268
final value 87.234268
converged
Fitting Repeat 5
# weights: 507
initial value 106.337150
iter 10 value 91.964885
iter 20 value 89.642865
iter 30 value 87.601760
iter 40 value 87.597571
iter 50 value 87.587693
iter 60 value 87.228618
iter 70 value 87.214675
iter 80 value 87.212088
iter 90 value 87.209506
iter 100 value 86.993322
final value 86.993322
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 129.910831
iter 10 value 113.425730
iter 20 value 112.859262
iter 30 value 112.815997
iter 40 value 111.387841
iter 50 value 111.387028
iter 60 value 109.353537
iter 70 value 108.328630
iter 80 value 108.283859
iter 90 value 105.087738
iter 100 value 104.940172
final value 104.940172
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 129.033490
iter 10 value 117.870771
iter 20 value 117.673724
iter 30 value 106.061757
iter 40 value 105.037477
iter 50 value 104.836513
final value 104.829181
converged
Fitting Repeat 3
# weights: 305
initial value 118.622476
iter 10 value 117.894642
iter 20 value 117.828771
iter 30 value 111.649945
iter 40 value 111.543936
iter 50 value 111.542108
iter 60 value 110.508931
iter 70 value 110.448214
iter 80 value 110.438447
iter 90 value 110.437442
iter 100 value 110.436541
final value 110.436541
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.256531
iter 10 value 107.459576
iter 20 value 107.168248
iter 30 value 107.162364
iter 40 value 106.477902
iter 50 value 103.584410
iter 60 value 102.910899
iter 70 value 102.904436
iter 80 value 102.765326
iter 90 value 102.126530
iter 100 value 101.625948
final value 101.625948
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 121.408900
iter 10 value 117.763491
iter 20 value 113.346497
iter 30 value 107.220140
iter 40 value 107.165976
iter 50 value 107.162172
iter 60 value 105.956728
iter 70 value 104.693352
iter 80 value 104.679152
iter 90 value 104.643474
iter 100 value 103.476372
final value 103.476372
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed May 6 01:04:49 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.335 1.259 91.653
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.841 | 0.459 | 34.371 | |
| FreqInteractors | 0.438 | 0.026 | 0.464 | |
| calculateAAC | 0.031 | 0.001 | 0.033 | |
| calculateAutocor | 0.262 | 0.019 | 0.282 | |
| calculateCTDC | 0.071 | 0.001 | 0.072 | |
| calculateCTDD | 0.471 | 0.002 | 0.473 | |
| calculateCTDT | 0.129 | 0.002 | 0.130 | |
| calculateCTriad | 0.370 | 0.006 | 0.376 | |
| calculateDC | 0.082 | 0.009 | 0.091 | |
| calculateF | 0.298 | 0.001 | 0.299 | |
| calculateKSAAP | 0.091 | 0.008 | 0.098 | |
| calculateQD_Sm | 1.739 | 0.022 | 1.760 | |
| calculateTC | 1.473 | 0.157 | 1.630 | |
| calculateTC_Sm | 0.274 | 0.004 | 0.278 | |
| corr_plot | 33.627 | 0.474 | 34.177 | |
| enrichfindP | 0.557 | 0.038 | 9.869 | |
| enrichfind_hp | 0.044 | 0.004 | 0.988 | |
| enrichplot | 0.495 | 0.003 | 0.498 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.367 | 0.005 | 3.872 | |
| getHPI | 0.001 | 0.001 | 0.002 | |
| get_negativePPI | 0.003 | 0.001 | 0.004 | |
| get_positivePPI | 0.000 | 0.001 | 0.000 | |
| impute_missing_data | 0.003 | 0.001 | 0.004 | |
| plotPPI | 0.097 | 0.002 | 0.098 | |
| pred_ensembel | 12.802 | 0.237 | 11.718 | |
| var_imp | 33.584 | 0.685 | 34.295 | |