Shraddha Pai
| Snapshot Date: 2026-04-19 13:40 -0400 (Sun, 19 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/IdeoViz |
| git_branch: devel |
| git_last_commit: 847e77c |
| git_last_commit_date: 2025-10-29 10:21:58 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-20 11:37 -0400 (Mon, 20 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4961 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4690 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1050/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IdeoViz 1.47.0 (landing page) Shraddha Pai
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | OK | ERROR | ||||||||||
| See other builds for IdeoViz in R Universe. | ||||||||||||||
|
To the developers/maintainers of the IdeoViz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IdeoViz.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: IdeoViz |
| Version: 1.47.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:IdeoViz.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings IdeoViz_1.47.0.tar.gz |
| StartedAt: 2026-04-17 04:21:55 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 04:22:06 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 11.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: IdeoViz.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:IdeoViz.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings IdeoViz_1.47.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/IdeoViz.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IdeoViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IdeoViz’ version ‘1.47.0’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Depends: includes the non-default packages:
'Biobase', 'IRanges', 'GenomicRanges', 'RColorBrewer', 'rtracklayer',
'GenomeInfoDb'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IdeoViz’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.23-bioc/meat/IdeoViz.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.23-bioc/meat/IdeoViz.Rcheck/00check.log’
for details.
IdeoViz.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL IdeoViz ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘IdeoViz’ ... ** this is package ‘IdeoViz’ version ‘1.47.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error: package or namespace load failed for ‘rtracklayer’: class "Seqinfo" is not exported by 'namespace:GenomeInfoDb' Execution halted ERROR: lazy loading failed for package ‘IdeoViz’ * removing ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/IdeoViz’ * restoring previous ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/IdeoViz’