Elena Grassi
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/MatrixRider |
| git_branch: devel |
| git_last_commit: c9dff82 |
| git_last_commit_date: 2025-10-29 10:24:34 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1224/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MatrixRider 1.43.0 (landing page) Elena Grassi
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for MatrixRider in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MatrixRider package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixRider.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MatrixRider |
| Version: 1.43.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MatrixRider |
| StartedAt: 2026-04-17 00:25:21 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 00:25:30 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MatrixRider
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* checking for file ‘MatrixRider/DESCRIPTION’ ... OK
* preparing ‘MatrixRider’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘MatrixRider’ ...
** this is package ‘MatrixRider’ version ‘1.43.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c Biostring_stubs.c -o Biostring_stubs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c CuTest.c -o CuTest.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_init_MatrixRider.c -o R_init_MatrixRider.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RunCuTest.c -o RunCuTest.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c XVector_stubs.c -o XVector_stubs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/IRanges/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/XVector/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Biostrings/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c matrix_rider.c -o matrix_rider.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/tmp/RtmpyISRUj/Rinstc81433893e348/00LOCK-MatrixRider/00new/MatrixRider/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error: class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
Execution halted
ERROR: lazy loading failed for package ‘MatrixRider’
* removing ‘/home/biocbuild/tmp/RtmpyISRUj/Rinstc81433893e348/MatrixRider’
-----------------------------------
ERROR: package installation failed