| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-06 11:32 -0500 (Fri, 06 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4857 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1258/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MethReg 1.21.0 (landing page) Tiago Silva
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for MethReg in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MethReg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MethReg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MethReg |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg |
| StartedAt: 2026-02-05 18:38:52 -0500 (Thu, 05 Feb 2026) |
| EndedAt: 2026-02-05 18:47:30 -0500 (Thu, 05 Feb 2026) |
| EllapsedTime: 517.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg
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* checking for file ‘MethReg/DESCRIPTION’ ... OK
* preparing ‘MethReg’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MethReg.Rmd’ using rmarkdown
Quitting from MethReg.Rmd:512-524 [interaction_model]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarise()`:
ℹ In argument: `fdr.by.region = p.adjust(.data[["RLM_metGrp_pvalue"]], method = "fdr")`.
ℹ In group 1: `regionID = "chr21:17611485-17611486"`.
Caused by error:
! `fdr.by.region` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
---
Backtrace:
▆
1. ├─MethReg::interaction_model(...)
2. │ └─MethReg:::calculate_fdr_per_region_adjustment(ret)
3. │ └─results %>% group_by(.data$regionID) %>% ...
4. ├─dplyr::summarise(...)
5. ├─dplyr:::summarise.grouped_df(...)
6. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
7. │ └─base::withCallingHandlers(...)
8. └─dplyr:::dplyr_internal_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MethReg.Rmd' failed with diagnostics:
ℹ In argument: `fdr.by.region = p.adjust(.data[["RLM_metGrp_pvalue"]], method = "fdr")`.
ℹ In group 1: `regionID = "chr21:17611485-17611486"`.
Caused by error:
! `fdr.by.region` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
--- failed re-building ‘MethReg.Rmd’
SUMMARY: processing the following file failed:
‘MethReg.Rmd’
Error: Vignette re-building failed.
Execution halted