Multiple platform build/check report for BioC 3.23 - BUILD results for MsExperiment on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4957
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4686
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MsExperiment on kunpeng2

To the developers/maintainers of the MsExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: MsExperiment

Version: 1.13.1

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment

StartedAt: 2026-04-17 00:45:52 -0000 (Fri, 17 Apr 2026)

EndedAt: 2026-04-17 00:46:57 -0000 (Fri, 17 Apr 2026)

EllapsedTime: 65.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment
###
##############################################################################
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* checking for file ‘MsExperiment/DESCRIPTION’ ... OK
* preparing ‘MsExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsExperiment.Rmd’ using rmarkdown

Quitting from MsExperiment.Rmd:159-162 [sp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
---
Backtrace:
    ▆
 1. ├─Spectra::Spectra(experimentFiles(msexp)[["mzmls"]])
 2. ├─Spectra::Spectra(experimentFiles(msexp)[["mzmls"]])
 3. │ └─Spectra (local) .local(object, ...)
 4. │   ├─Spectra:::.create_spectra(...)
 5. │   │ └─ProtGenerics::backendInitialize(...)
 6. │   └─Spectra::MsBackendMzR()
 7. │     └─base::stop(...)
 8. └─base::.handleSimpleError(...)
 9.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MsExperiment.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
--- failed re-building ‘MsExperiment.Rmd’

SUMMARY: processing the following file failed:
  ‘MsExperiment.Rmd’

Error: Vignette re-building failed.
Execution halted